Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1600 ATGAACCCTGTGTGGAACCCCCCTTTGAAGCTTCTTCACCTTCTTCTCTTTCTGCTTCACCTTAATTCTCTCTGTTCCTACCCGACCCCCATGAGCTGTACGGACACGACCCGCGTGTGCACTTCCTTTTTGGCCTTCAAACCCCAACCAAAGCAGACACTCGCAACTGTACAGAGCATGTTCGATGCATTGCCCAGTGACATTACAGTGGAAGGCAATGGCTGGGATTACCTGTTCATCAGGAAGAACTGTTCCTGCGCTTCTGGTATAAAGAAATACGTTTCCAACACTACCTTGACAGTGAAATCCAATGAAGGGTTTGTGTATGACGTGGTGATGGATGCCTATGATGGGCTTGCTATCTTGCCCAACACGACCCGGAGGGCAAAAATCGGCGCCGTTATATCACTGAGGTTGTTTTGTGGGTGTTCTAGTGGACTGTGGAACTATTTGGTGAGTTATGTCATGAGAGATGGGGACAGCGTTGAATCCTTGGCGAGTCGATTTGGGGTTAGTATGGATAGTATTGAGACGGTGAATGGTATTGATAATCCAGATAATGTCACTGTGGGTTCTCTGTACTATATACCTCTGAATTCAGCTCCCGGTGAGCCATATTCTTTAAAGAATGATACTCCTCCAGCACCTGTTCCTGCCCCATCTGCTGACTATTTTTCAGCTGATCAAGTTGATAATAAGGCTCACGTACCATATGGATGGATCATTGGTGGTTTAGGGGTTGGTCTTGCTCTCATAATATTAAGCATAATTCTCTGTGTTTCCATGAGATCGTCTCATTGTTTTGCTGATGCCAGAAGAAGTCATGCAAAAGATACTGAGGACAAGATCTTTCATAAGTTCCATGTTCTTCGGAATTCAAGTTTTTGTTGTGGTTCAGGAAGGTACATTAGTGACAAGCCTGTAGACCAAAAGCAAACTGATGGTGAATCTAGCAACCACCAAATTACCATTCCCAAAGGTTCAACTCTAGGGACTGATGTATTAGACGTGGATAAGCCTGTAGTTTTCACATATGAAGAGATTTTCTCGTCAACTGATTGCTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGTTCTGTTTACTATGGCCTACTCCGCAACCAGGAAGTTGCTATCAAAAAAATGACTGCTACAAAAACTAAAGAATTTATGTCAGAGATGAAAGTCCTGTGCAAGGTTCATCATGCAAATTTGGTAGAATTGATCGGCTATGCAGCTAGCCATGATGAGCTTTTCCTTATTTATGATTATGCACTGAAGGGTTCACTCAAAAGCCATTTGCATGATCCTCAGAATAAAGGTCATTCCTCTCTTTCTTGGATCATGAGGGTCCAGATTGCGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCACACCAAAACCCATTACATCCATCGAGATATCAAAACAAGTAACATTTTACTTGATGCTTCCTTCAGAGCAAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGACAGCAAATGAGGGAGAAATTACTACAACCAAAGTTATTGGTACATATGGTTATCTTGCTCCAGAATACTTGAGCGATGGCCTTGCATCAACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTCTTCGAGATTATATCTGGGAAGGAGGCCATCATTCGAACAGAAGGCACAGTGACAAGAAATCCTGAACGACGATCATTGGCATCTATTATGCTGGCAGCTCTTAGAAACTCACCCGATTCCTTGAGCATGTCAAGCATGAGAGATTATATTGATCCTAACATGATGGATCTGTATCCTCATGATTGTGTATACAAGATGGCGATGCTGGCAAAGCAATGCGTGGACGACGATCCCATCTTAAGACCTGATATGAAACAAGTTGTGATTTCCCTCTCACAGATTCTCTTGTCATCTGTTGAGTGGGAAGCAACTCTAGCAGGGAACAGTCAGGTTTTCAGTGGACTTGTTCAGGGAAGATAG 1998 0.4309 MNPVWNPPLKLLHLLLFLLHLNSLCSYPTPMSCTDTTRVCTSFLAFKPQPKQTLATVQSMFDALPSDITVEGNGWDYLFIRKNCSCASGIKKYVSNTTLTVKSNEGFVYDVVMDAYDGLAILPNTTRRAKIGAVISLRLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMDSIETVNGIDNPDNVTVGSLYYIPLNSAPGEPYSLKNDTPPAPVPAPSADYFSADQVDNKAHVPYGWIIGGLGVGLALIILSIILCVSMRSSHCFADARRSHAKDTEDKIFHKFHVLRNSSFCCGSGRYISDKPVDQKQTDGESSNHQITIPKGSTLGTDVLDVDKPVVFTYEEIFSSTDCFSDSNLLGHGTYGSVYYGLLRNQEVAIKKMTATKTKEFMSEMKVLCKVHHANLVELIGYAASHDELFLIYDYALKGSLKSHLHDPQNKGHSSLSWIMRVQIALDAARGLEYIHEHTKTHYIHRDIKTSNILLDASFRAKISDFGLAKLVGTANEGEITTTKVIGTYGYLAPEYLSDGLASTKSDVYAFGVVLFEIISGKEAIIRTEGTVTRNPERRSLASIMLAALRNSPDSLSMSSMRDYIDPNMMDLYPHDCVYKMAMLAKQCVDDDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1600 665 Gene3D Phosphorylase Kinase; domain 1 331 426 - -
Dere11g1600 665 Pfam Protein tyrosine and serine/threonine kinase 359 635 IPR001245 GO:0004672|GO:0006468
Dere11g1600 665 Pfam LysM domain 154 191 IPR018392 -
Dere11g1600 665 FunFam PTI1-like tyrosine-protein kinase 3 427 651 - -
Dere11g1600 665 SMART serkin_6 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1600 665 SUPERFAMILY LysM domain 152 197 IPR036779 -
Dere11g1600 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Dere11g1600 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Dere11g1600 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1600 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 64 659 IPR044812 GO:0019199|GO:0045087
Dere11g1600 665 SMART LysM_2 153 197 IPR018392 -
Dere11g1600 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Dere11g1600 665 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Dere11g1600 665 FunFam Kinase family protein 330 426 - -
Dere11g1600 665 Gene3D LysM domain 149 204 IPR036779 -
Dere11g1600 665 SUPERFAMILY Protein kinase-like (PK-like) 336 637 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1600 Dere-ChrDere11 29609857 29616076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1600 30 665 Receptor kinase-like Gene Family AT1G51940 67.391 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Dere11g1600 PK_Tyr_Ser-Thr 1.6e-49 CL0016