Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1598 ATGCCCGAATCTCTCTGGTTTTTCATACTCTCCCCTGTTTCTCAGGGTACCCTCCTCTCCGTACCCTCTCCTTCAAAAAGTGCTTTTCCAGTGGTTCAAGGCTTTCTAGCTTACAGGCTGTTCTGGGTTTCTCTTGTTCTTTTTCCTGTGGTTGAGATATCAAAGATGGATGTGAGGTCAACAAATGAGGAGGTGTCTCCTCTGCTGTTAGATTTGATCCCAAAAGTTCACAAAGAGTGGCATATGAGCGACGGAGACGAAGAAGGAAGAAGCCACAGCAACAACAAGTCTTGTGAGGAGAGAAAACTTGAGCTTAGACTCGGTCCACCTGGTGAAGACTGGTCTCTCAATCATAACACCAAAAACGTCATCAACAGTGACGACTCTCTACTCTCTCTTGGTTACTTCTCTCAAACCCAGAAAATTTCTACCTCTCCATGGTCTTCAAAAGCTTCATCATTTCTTCAGTTCCCATCATGTAGCCCACACAACATGCCAGTGATAGACTTGCAGAATGCTGAGAAGAAACCTTTCTCTTCACCCTCTTCTGCAAATCCAGCTGTGCCCTCCAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGATGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAACAGCTCTTCTAAGACAGCTCATGAGACACAGCAGCAACAGCAGCATCAGCATGTTGTTGCAGACAAGGTTGCAGGCAAGAAACCTGTTGTTGACAACGTTGGTAAAGGGCTATTTGTGAAGATCAATATGGATGGTGTCCCAATTGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAAACTATCGTATGCAGTTGATGAACTCTTCAGATGCCTCCTTGTTGCTCAAAGAGATTCCTCTGCTGGAGGAATACAGAACAAGGAGGAGGAAGAGAAAGCAATTACTGGTTTATTGGATGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTAGTTGGGGACGTGCCCTGGCACATGTTCGTGTCTACGGTGAAGAGGCTGCGCGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGTCGCAAACAAGACAAGAAAACCACTTAA 1128 0.4548 MPESLWFFILSPVSQGTLLSVPSPSKSAFPVVQGFLAYRLFWVSLVLFPVVEISKMDVRSTNEEVSPLLLDLIPKVHKEWHMSDGDEEGRSHSNNKSCEERKLELRLGPPGEDWSLNHNTKNVINSDDSLLSLGYFSQTQKISTSPWSSKASSFLQFPSCSPHNMPVIDLQNAEKKPFSSPSSANPAVPSNSSQKRTAPGPVVGWPPIRSFRKNLASNSSSKTAHETQQQQQHQHVVADKVAGKKPVVDNVGKGLFVKINMDGVPIGRKVDLNAYDSYEKLSYAVDELFRCLLVAQRDSSAGGIQNKEEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGRKQDKKTT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1598 375 ProSiteProfiles PB1 domain profile. 254 358 IPR000270 GO:0005515
Dere11g1598 375 Pfam AUX/IAA family 103 363 IPR033389 -
Dere11g1598 375 FunFam Auxin-responsive protein 249 370 - -
Dere11g1598 375 MobiDBLite consensus disorder prediction 175 198 - -
Dere11g1598 375 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 99 361 IPR003311 GO:0005634|GO:0006355
Dere11g1598 375 MobiDBLite consensus disorder prediction 174 239 - -
Dere11g1598 375 MobiDBLite consensus disorder prediction 212 236 - -
Dere11g1598 375 SUPERFAMILY CAD & PB1 domains 250 355 - -
Dere11g1598 375 Gene3D - 249 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1598 Dere-ChrDere11 29582521 29586305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1598 257 369 B3 DNA Binding Superfamily AT4G23980 33.628 1.74e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere11g1598 AUX_IAA 6.4e-73 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1598 11 29582521 29586305 Dere11g1598 11 29582521 29586305 ECH