Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1590 ATGGCCCAGCGAAAAATTTATGCCTTCCTTCCAATTTCAGCTACTTGCTTGGCTTTGTGGGTACTATGCCCGGGTATTTCAGGACTCACCGAAACTGAAGCTTTGCTCAAATGGAAACAAAATCTCCCAAACCAACCAGTTTTAGATTCATGGGTCTCTGCACAGAACACCAACTCTAGTGCTGCTCAAACCCCATGTTCATGGCTTGGAATCACATGTGATTCTTCAGGAAGTGTGGTTGAACTAGACTTGAAACGCACTGGTCTTCAAGGTACCCTTCAAAACTTGAACTTCTCAGCATTTCCAAATCTTCTTCTTCTTAATCTCAAATTTAACAAACTCAGTGGCCCCATACCAGAAAGCATTGGGGTGCTTTCAAAACTCCAATTTCTTGACCTTAATCACAATCATCTCAATGGGACTATACCTCTGTCTCTTGCCAATCTTACTCAACTTTATGAGCTTGATCTTTCACAAAACGATCTAACAGGAATCTTAGACCCTCGTCTATTTCCTAATGGCACTGATCAACCCAAAATTGGCCTGATTGGGATCCAAAATCTCGTCTTGCAAGACAACCTCCTTGGCGGTAGAATTCCACACGAAATAGGGAATCTAAGAGATTTAACTATTCTAGCTTTAGATGGGAATGGCTTCTATGGGCCCATTCCACTATCTTTAGCCAACTGTACAAAGTTAAGTGTTATCTCAATGACAGAAAACCATCTCTCAGGCATAATTCCGCCTAGTACTGGTAGATTGACCAATCTCATTGAGATTCGTCTTCGCAACAACCATTTACATGGTCATGTGCCACAAGAGTTTGGAAATCTTTCATCTTTATCTGTACTGCTTCTTGCTGAGAACAACTTCACTGGTCAATTACCACCGCATGTGTGCAAAGGTGGTAAGCTTGTCAATTTCACGGCAGGCTACAATAGTTTCACTGGTCCAATCCCAGTAAGCCTAGGAAATTGCTCATCATTATTTAAAGTTCAACTTGAACATAACCAACTGACAGGTTATGCAGACCGAGATTTTGGAGTTTATCCTAATCTTACTTACCTTGACATAAGCTACAATAGAGTACAAGGTGAGCTCTCTGCAAATTGGGGTGCCTGTAAAAGCTTGCAACTTCTTAGAGTGGCTGGAAATTCCATACACGGCACTATTCCTGGTGCGATTTTTCAGTTGGGTCAATTAGTAGACCTTGATTTGTCCTACAACAAAATTGCCGGAGATATTCCTCCACAAATAGGGAATTCCTCAAGCCTGTACAATCTATATTTGAATGGCAACAATCTTTCAGGTATCATACCTTTGGCCATTGGAAAGCTTTCCAATCTGCAGGCTTTAGACCTATCAACGAACAAGCTCAATGGACCAATCCCTTATCAAATAGGGAATTGCTACAAATTGGTGAGTTTAAACTTGAGCAACAATGACTTCTTTGGTATAGTCCCTGACCAAATTGGAAATCTTGCAGCCCTACAATATTTTTTGGACTTGAGTTACAATTCACTCTCTGGAAAAATTCCTGCTGAATTTGGTAAGCTCCAAAATTTGGAAAGCTTAAATATGTCTCACAATAATTTGTCAGGCTCTATCCCTGATTCGCTTAGTAGAATGTTGAGCTTGTCAAGCCTCAACCTCTCATACAATAATTTGGAGGGTCTTGTACCGGATAGTGGCATATTCAATTCTTCCTATCCACTAGATTTGAGTAAAAACAATAAATTATGTGGAAGGATACGTGGCTTACAGCCTTGCATTGTCACTGTGAGAGAAACACCACATGAAAGTAACAAGATGAAAGTTGTTATAGCTATTGTCACTTCTTTGGGAGGTGCACTGTTTGTCTCATTGTTGGTTGGTATTTTTGTTATTCGCCATAAGAGAAACTCAATAGTTTCAAAAGATCAATGTGCAGCCATGATACAAAATCCTTTTTCAATATGGCACTTCAATGGTAGAGTTGTGTACGAAGACATAATTGAAGCAACTATGAACTTTAATGACATGTATTCAATAGGGGAGGGAGCTTTTGGAAAAGTCTATAAAGTAGTAATGCCAGGTGGTGACGTGTATGCTGTTAAAAAGTTAAGATATGAATCAGGCGACTTAGACATCGAGAGCATAAAAGCCTTTAAGAGTGAGATTGAAGCTTTGACAGAAATACGCCATCGGAACATCGTGAAGTTGTATGGATTTTGCTCACAAGGTTTGCACACATTTTTAATTTATGATTACATGGAAAGAGGGAATTTAGCTAATATGCTTAGAGATAGCAAAGAAGCATTAGAGTTACATTGGCCTACGAGGGTTGAGATCGTCAAAGGTGTAGCTCAAGCTTTATCTTACATGCATCATGATTGCAATCCACCAATAATTCACAGAGACATATCAAGCAACAATATATTATTATCTGCACATCTTGAAGCCCATGTCTCAGACTTTGGCACAGCAAGGTTCCTGAAGCCTGATTCATCAATTTGGACAACATTTGCTGGCACATATGGCTATGCTGCTCCAGAGCTTGCATACTCAATGGCAGTGTCTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTAGCTCTCGAGGTTCTTATGGGAAGGCATCCAAGTGATCTAATTTCCCACATACAAACAAGTGGTCTTCAAAACATCAACTTCAAAGAGATTTTAGATCCACGTCTAACATTGCCCGCAGAAAAAAAGTTGAAGGAATTAACTTTGATTGGGACTCTAGCTCTTTCATGTTTACAAACAAATCCTCCGTCTCGACCAACCATGCGAAGGATAGCCCAGATGATTCAAATGGATAGTGCTCAACATTGA 2838 0.3996 MAQRKIYAFLPISATCLALWVLCPGISGLTETEALLKWKQNLPNQPVLDSWVSAQNTNSSAAQTPCSWLGITCDSSGSVVELDLKRTGLQGTLQNLNFSAFPNLLLLNLKFNKLSGPIPESIGVLSKLQFLDLNHNHLNGTIPLSLANLTQLYELDLSQNDLTGILDPRLFPNGTDQPKIGLIGIQNLVLQDNLLGGRIPHEIGNLRDLTILALDGNGFYGPIPLSLANCTKLSVISMTENHLSGIIPPSTGRLTNLIEIRLRNNHLHGHVPQEFGNLSSLSVLLLAENNFTGQLPPHVCKGGKLVNFTAGYNSFTGPIPVSLGNCSSLFKVQLEHNQLTGYADRDFGVYPNLTYLDISYNRVQGELSANWGACKSLQLLRVAGNSIHGTIPGAIFQLGQLVDLDLSYNKIAGDIPPQIGNSSSLYNLYLNGNNLSGIIPLAIGKLSNLQALDLSTNKLNGPIPYQIGNCYKLVSLNLSNNDFFGIVPDQIGNLAALQYFLDLSYNSLSGKIPAEFGKLQNLESLNMSHNNLSGSIPDSLSRMLSLSSLNLSYNNLEGLVPDSGIFNSSYPLDLSKNNKLCGRIRGLQPCIVTVRETPHESNKMKVVIAIVTSLGGALFVSLLVGIFVIRHKRNSIVSKDQCAAMIQNPFSIWHFNGRVVYEDIIEATMNFNDMYSIGEGAFGKVYKVVMPGGDVYAVKKLRYESGDLDIESIKAFKSEIEALTEIRHRNIVKLYGFCSQGLHTFLIYDYMERGNLANMLRDSKEALELHWPTRVEIVKGVAQALSYMHHDCNPPIIHRDISSNNILLSAHLEAHVSDFGTARFLKPDSSIWTTFAGTYGYAAPELAYSMAVSEKCDVFSFGVLALEVLMGRHPSDLISHIQTSGLQNINFKEILDPRLTLPAEKKLKELTLIGTLALSCLQTNPPSRPTMRRIAQMIQMDSAQH 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1590 945 FunFam Leucine-rich repeat receptor-like protein kinase TDR 275 592 - -
Dere11g1590 945 ProSiteProfiles Protein kinase domain profile. 671 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1590 945 Pfam Leucine rich repeat 472 532 IPR001611 GO:0005515
Dere11g1590 945 ProSitePatterns Protein kinases ATP-binding region signature. 677 700 IPR017441 GO:0005524
Dere11g1590 945 Gene3D Ribonuclease Inhibitor 178 306 IPR032675 -
Dere11g1590 945 FunFam MDIS1-interacting receptor like kinase 2 751 944 - -
Dere11g1590 945 FunFam Leucine-rich repeat receptor protein kinase MSP1 633 750 - -
Dere11g1590 945 PRINTS Leucine-rich repeat signature 152 165 - -
Dere11g1590 945 PRINTS Leucine-rich repeat signature 446 459 - -
Dere11g1590 945 ProSitePatterns Tyrosine protein kinases specific active-site signature. 796 808 IPR008266 GO:0004672|GO:0006468
Dere11g1590 945 ProSiteProfiles Leucine-rich repeat profile. 521 543 IPR001611 GO:0005515
Dere11g1590 945 SUPERFAMILY Protein kinase-like (PK-like) 652 938 IPR011009 -
Dere11g1590 945 Gene3D Transferase(Phosphotransferase) domain 1 751 945 - -
Dere11g1590 945 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Dere11g1590 945 SMART LRR_typ_2 278 302 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 125 148 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 519 542 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 254 277 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 543 568 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 149 173 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 398 422 IPR003591 -
Dere11g1590 945 SMART LRR_typ_2 446 470 IPR003591 -
Dere11g1590 945 FunFam Leucine-rich repeat receptor protein kinase EMS1 178 273 - -
Dere11g1590 945 Gene3D Phosphorylase Kinase; domain 1 632 750 - -
Dere11g1590 945 PANTHER LEUCINE RICH REPEAT KINASE 2 228 942 - -
Dere11g1590 945 Gene3D Ribonuclease Inhibitor 113 177 IPR032675 -
Dere11g1590 945 SUPERFAMILY RNI-like 237 581 - -
Dere11g1590 945 Pfam Protein kinase domain 673 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1590 945 Gene3D Ribonuclease Inhibitor 307 596 IPR032675 -
Dere11g1590 945 Gene3D Ribonuclease Inhibitor 27 112 IPR032675 -
Dere11g1590 945 FunFam Nuclear pore complex protein NUP107 29 175 - -
Dere11g1590 945 SUPERFAMILY RNI-like 76 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1590 Dere-ChrDere11 29359968 29363155 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1590 29 844 Receptor kinase-like Gene Family AT4G08850 40.680 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere11g1590 Pkinase 7.8e-48 CL0016