Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1585 ATGGCCCAGCATAAAAGTTCTGCCTTCCTTGCAATTTCAGTTACTTGCTTGGCTCTGTGCGCACTATGCCAGGGCACTTCAGGACTCACCGAAGCTGAAGCTCTGCTCAAATGGAAACAAAGTCTCCCAAACCAACCAATATTTGACTCATGGGTCTCTCCACTGCACACTAACTCTAGTGCTGCTCTAACTCCATGTTCCTGGCGGGGAATCACATGTGATTCTTCAGGAAGTGTGGTTGAAATAAACTTGAAACGCAGTGGTTTTCAAGGTACCCTTCAAAACTTAAACTTCTCAGCATTGCCAAATCTTCTTCTTCTTAATCTCAAATTTAACGAACTCAGTGGCCCCATACCAGAAAGCATAGGGGTGCTTTCAAAACTCCAATTCCTTGACCTTAATCACAATCATCTCAATGGTACTATACCTCTGTCTCTTGCTAATCTCACTCAACTTTATGAGCTTGATCTTTCACAAAATGATCTAACAGGAATACTAGACCCTCGGCTATTTCCTAATGGCACTGATCATCCTAAAATTGGCCTGAATGGGATCCAATATCTCGTCTTACGGGACACCTTCCTTGGTGGTAGAATTCCAAATGAAATTGGGAATCTGAGAGATTTGACTGCTCTAGCTATAGATGGGAATAACTTCTATGGGCCCATTCCACCATCTCTAGCCAACTGTACACAATTAAGTGTTATCTCAATGTCTGAAAACCATCTCTCTGGCACAATTCCCCCTAGTATTGGTAGATTGACCAATCTAATTGATATTCGCCTTCACAGAAACAATTTACATGGTCATGTACCACAAGAGTTTGGAATTTTTTCATCTTTAACAGTCCTGCTTCTCGCTGAGAACAACTTCAATGGTCAATTACCACCAGATGTGTGCAAAGGTGGTAAGCTTGTCAATTTCACTGCAAGCTACAATAGTTTCACTGGTCCAATCCCTGTAAGCCTAAGAAACTGCCCTGCCTTATACAAAGTTCGAATTAACCACAACCAACTCACTGGTTATGCTGATCAAGATTTTGGAGTTTATCCTAATCTTACTTACCTTGACATAAGCTACAATAGAGTGCAGGGCGTGCTCTCTGCAAAATGGGGTGCCTGCAAAAGCTTGCAACTTCTTAAAGTGGCTAGAAATTCATTAGATGGCACTATTCCTGGTGAGATTTTTCAGTTGGACCAGTTAGTAGAGCTTGATTTGTCCTACAACAAAATTGCAGGAGAAATTCCTCCACAAATAGGGAATTCCTCAAGCCTGTACAATCTATATTTGAATAGCAACAATCTTTCAGGTTTGATACCCTTGGGTATTGGAAAGCTTTCCAATTTGCAGGCTTTAGACCTATCAACGAACAAGCTTAATGGACTAATCCCTTATCAAATAGGGAACTGCTACAAATTGGTGAGTTTAAATTTAAGCAACAATGACCTCTTTGGTACAGTCCCTGACCAGATTGGAAATCTTGCAGCCCTACAATATTTTTTGGACTTGAGTTGCAATTCACTCTCTGGAAAAATTCCTGCTGATCTTGGTAAGCTCCAAAATTTGGAAAGCTTAAATATGTCTCACAATAATTTGTCAGGCTCTATCCCTGATTTGCTTAGTAGAATGTTGAGCTTGTCAAGCATCAACCTCTCATACAATAATTTGGAGGGACCTGTACCTAGTAGTGGCATATTCAATTCTTCTTATCCATTGGATTTGAGTAAAAACAATAATTTATGTGGAAAGATACATGGATTACAACCTTGCAATGTCCCATTCATAGAACCTCCACAAAAAAGTAACATGAAGAAAGTTGTAATAGTTATTGTCACTTCTGTGGGAGCTGCACTGTTTGTCTCATTATTGTTGGTTGGGATTTTTGTTTTTCTCCATAAGAGAAACTCAAGAGTTTTGAAAGATAAATCTACAGCCATGAAACAAAATCCATTTTCAATATGGCACTTCAATGGTAGAGTTGTGTACGAAGACATAATTGAAGCAACTAAGAACTTTGATGACATCTATTCAATTGGGGAGGGAGCTTTTGGAAAAGTTTATAAAGTGGTAATGCCAGGAGGTGATGTGTTTGCTATTAAAAGGTTAAGATACGAAGCAAGCGACTTAGACATCGAAAGCATAAAAGCCTTTAAGAGTGAGATTGAAGCCTTGACAGAAACACGTCATCGGAACATTGTGAAGCTGTATGGATTTTGTTCACAAGGGTTGCACACATTTTTGATTTATGAGTACATGGAAAGAGGGAATTTAGCTAATATGCTTAGAAATGACGAAGAAGCATTAGAGTTTGATTGGCCTACGAGGGTTGGAATCATCAAAGGCGTAGCTCAAGCTTTATCTTACATGCATCATGATTGTAATCCACCGATAATTCACAGAGACATATCAAGCAACAATATATTATTGTCTGCACGTCTTGAAGCCCATGTCTCAGACTTCGGCACAGCAAGGTTCCTGAAGCCTGATTCATCAATTTGGACAACATTTGTTGGAACATATGGCTATGCTGCTCCAGAGCTTGCATACTCAATGGCAGTGTCTGAGAAATGTGATGTATTCAGTTTTGGTGTTTTAGCTCTTGAGGTTCTTATGGGAAAGCATCCAGGTGACCTAATTTCCCATATACAAACAAGTGGTTTTCAAAACATCGAATTCAAAGACATTTTAGACACACGTCTATCATCGCCCACAGAACAAAAGTTGAAGGAATTGACTTTGATTGGGACTCTAGCTCTTTCATGTTTACAAACAAATCCTCCATCTCGACCAACCATGCGAATCATAGCACAGACGATTTAA 2820 0.3965 MAQHKSSAFLAISVTCLALCALCQGTSGLTEAEALLKWKQSLPNQPIFDSWVSPLHTNSSAALTPCSWRGITCDSSGSVVEINLKRSGFQGTLQNLNFSALPNLLLLNLKFNELSGPIPESIGVLSKLQFLDLNHNHLNGTIPLSLANLTQLYELDLSQNDLTGILDPRLFPNGTDHPKIGLNGIQYLVLRDTFLGGRIPNEIGNLRDLTALAIDGNNFYGPIPPSLANCTQLSVISMSENHLSGTIPPSIGRLTNLIDIRLHRNNLHGHVPQEFGIFSSLTVLLLAENNFNGQLPPDVCKGGKLVNFTASYNSFTGPIPVSLRNCPALYKVRINHNQLTGYADQDFGVYPNLTYLDISYNRVQGVLSAKWGACKSLQLLKVARNSLDGTIPGEIFQLDQLVELDLSYNKIAGEIPPQIGNSSSLYNLYLNSNNLSGLIPLGIGKLSNLQALDLSTNKLNGLIPYQIGNCYKLVSLNLSNNDLFGTVPDQIGNLAALQYFLDLSCNSLSGKIPADLGKLQNLESLNMSHNNLSGSIPDLLSRMLSLSSINLSYNNLEGPVPSSGIFNSSYPLDLSKNNNLCGKIHGLQPCNVPFIEPPQKSNMKKVVIVIVTSVGAALFVSLLLVGIFVFLHKRNSRVLKDKSTAMKQNPFSIWHFNGRVVYEDIIEATKNFDDIYSIGEGAFGKVYKVVMPGGDVFAIKRLRYEASDLDIESIKAFKSEIEALTETRHRNIVKLYGFCSQGLHTFLIYEYMERGNLANMLRNDEEALEFDWPTRVGIIKGVAQALSYMHHDCNPPIIHRDISSNNILLSARLEAHVSDFGTARFLKPDSSIWTTFVGTYGYAAPELAYSMAVSEKCDVFSFGVLALEVLMGKHPGDLISHIQTSGFQNIEFKDILDTRLSSPTEQKLKELTLIGTLALSCLQTNPPSRPTMRIIAQTI 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1585 939 Gene3D Ribonuclease Inhibitor 111 176 IPR032675 -
Dere11g1585 939 FunFam Nuclear pore complex protein NUP107 29 175 - -
Dere11g1585 939 FunFam MDIS1-interacting receptor like kinase 2 752 939 - -
Dere11g1585 939 ProSiteProfiles Protein kinase domain profile. 672 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1585 939 SUPERFAMILY RNI-like 82 297 - -
Dere11g1585 939 Gene3D Ribonuclease Inhibitor 177 276 IPR032675 -
Dere11g1585 939 Gene3D Phosphorylase Kinase; domain 1 633 751 - -
Dere11g1585 939 SUPERFAMILY Protein kinase-like (PK-like) 652 937 IPR011009 -
Dere11g1585 939 ProSitePatterns Protein kinases ATP-binding region signature. 678 700 IPR017441 GO:0005524
Dere11g1585 939 Gene3D Ribonuclease Inhibitor 26 110 IPR032675 -
Dere11g1585 939 FunFam Leucine-rich repeat receptor protein kinase EMS1 178 274 - -
Dere11g1585 939 SMART LRR_typ_2 519 543 IPR003591 -
Dere11g1585 939 SMART LRR_typ_2 125 148 IPR003591 -
Dere11g1585 939 SMART LRR_typ_2 278 302 IPR003591 -
Dere11g1585 939 SMART LRR_typ_2 149 173 IPR003591 -
Dere11g1585 939 SMART LRR_typ_2 446 469 IPR003591 -
Dere11g1585 939 SMART LRR_typ_2 398 422 IPR003591 -
Dere11g1585 939 ProSiteProfiles Leucine-rich repeat profile. 521 543 IPR001611 GO:0005515
Dere11g1585 939 Pfam Protein kinase domain 674 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1585 939 Pfam Leucine rich repeat N-terminal domain 30 74 IPR013210 -
Dere11g1585 939 FunFam Leucine-rich repeat receptor protein kinase MSP1 634 751 - -
Dere11g1585 939 ProSitePatterns Tyrosine protein kinases specific active-site signature. 797 809 IPR008266 GO:0004672|GO:0006468
Dere11g1585 939 Pfam Leucine rich repeat 424 483 IPR001611 GO:0005515
Dere11g1585 939 Pfam Leucine rich repeat 501 556 IPR001611 GO:0005515
Dere11g1585 939 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515
Dere11g1585 939 Gene3D Transferase(Phosphotransferase) domain 1 752 939 - -
Dere11g1585 939 PANTHER LEUCINE RICH REPEAT KINASE 2 228 938 - -
Dere11g1585 939 Gene3D Ribonuclease Inhibitor 279 592 IPR032675 -
Dere11g1585 939 FunFam Leucine-rich repeat receptor-like protein kinase TDR 277 592 - -
Dere11g1585 939 SUPERFAMILY RNI-like 238 578 - -
Dere11g1585 939 PRINTS Leucine-rich repeat signature 152 165 - -
Dere11g1585 939 PRINTS Leucine-rich repeat signature 446 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1585 Dere-ChrDere11 28993341 28996435 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1585 26 845 Receptor kinase-like Gene Family AT4G08850 39.956 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dere11g1585 Pkinase 1.1e-47 CL0016