Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1562 ATGCTCTCACTTTCTCTGCAATTTTCACTGCAACTTTATAGTGCGCATGGAAATTGGAATATACAGAAGCAACCAAAAGGAGACTCAAACCAAGCCCTTCGAGTTGGGATTTATATTCTGGTTTTGGCTGCAGTAGATCAAGAACTGTCATCAGCTATGGATGGTCTGAGTTGGGATGCCTCACAAGTTGTGGAGAACTTACCAATTTTATGGGGCAATATGGAGCTACAAGAGCTTGAAGCAAGCTTAAATCCCAGCTTTCCTGATAATCAAATGCAAGAGATGCAGAAGCAGGCTCAGACAGGTCTTCCTCATCTATATTCAAATTCTGAAAAAGCAGTGATAAAAGAGATGGTTCAATTATCAGAAACCGAAGCAGAATTAACAGCTACTACAACTTCAAAGACAAATCTGTCACAGCTAGTAGGTGGGGCCAGTTGGGGTGGTGGACCTTACAGAATGAATAATCCATTTGGTAATTTTGAGCCTCCAGAATTCAGCATGGCCCACCAACAACCACAACTTGTCAATAAGGGCTCACAAAATGGTACCTGCTCTGTTGAGTCACTAGATTGCTTGTTCTCGGCTACAAATAGCAACACAGACACATCTATAGAAGATGATGGCATCTCCATGATCTTATCTGACTGCAGAAGATCAAACTTATGGAACTTCAGTTACAACAACGGAGGAAGTGAATCTGAGAGTACCACTAATGCTTCTAATGTTGATCATGAAACATTATCTCAGTGTTCCTCAGATCTTTATCTAAATCAAGGAGTCAAAATTGCAGAATCCGACAAGGGTAAGTGTACAAAAAGGAGCATTGATGATGCTTTTGACCAGTATCCCTACTTCAGCATTGAAGAAGGTGGTTCAAGTTCTTTCAGGTTCATTAAAGAGAATAACAACAACAATCCACCAAAACCCAAAAGACCCAGATGGGATTCTAGGCTTCCAACTTCATCAAACATCAATTTCCAGCAGCCAAACTCATCATCATCTTCCATGGAAGAACCAGACCCAGATGCCATAGCACAAATGAAAGAAATGATATATAGGGCTGCAGCCTTTAGGCCTGTGAATTTAGGAATGGAGGTGGTGGAGAAGCCAAAGAGGAAGAATGTAAGGATATCAACAGATCCTCAAACTGTGGCTGCAAGGCAGAGGAGGGAGAGAATAAGTGAAAGAATTAGGGTTTTGCAGAAACTGGTGCCTGGGGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAGGCTGCCAATTACCTCAAGTTTCTAAGGTCACAGGTTAAAGCATTAGAGAGCCTAGGAAGCAAACTTGATGCTATGAATTGTCCTCCTACTAATATTGCCTTCTCTTTTAACCCTTCTTTTCCAATGCAATATTACCCTAGCTAG 1401 0.4161 MLSLSLQFSLQLYSAHGNWNIQKQPKGDSNQALRVGIYILVLAAVDQELSSAMDGLSWDASQVVENLPILWGNMELQELEASLNPSFPDNQMQEMQKQAQTGLPHLYSNSEKAVIKEMVQLSETEAELTATTTSKTNLSQLVGGASWGGGPYRMNNPFGNFEPPEFSMAHQQPQLVNKGSQNGTCSVESLDCLFSATNSNTDTSIEDDGISMILSDCRRSNLWNFSYNNGGSESESTTNASNVDHETLSQCSSDLYLNQGVKIAESDKGKCTKRSIDDAFDQYPYFSIEEGGSSSFRFIKENNNNNPPKPKRPRWDSRLPTSSNINFQQPNSSSSSMEEPDPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGSKLDAMNCPPTNIAFSFNPSFPMQYYPS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1562 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 427 IPR011598 GO:0046983
Dere11g1562 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 383 444 IPR036638 GO:0046983
Dere11g1562 466 Pfam Helix-loop-helix DNA-binding domain 388 427 IPR011598 GO:0046983
Dere11g1562 466 Gene3D - 383 446 IPR036638 GO:0046983
Dere11g1562 466 Coils Coil 417 437 - -
Dere11g1562 466 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 197 451 IPR045843 GO:0003700|GO:0006355
Dere11g1562 466 SMART finulus 384 433 IPR011598 GO:0046983
Dere11g1562 466 MobiDBLite consensus disorder prediction 297 341 - -
Dere11g1562 466 MobiDBLite consensus disorder prediction 317 340 - -
Dere11g1562 466 FunFam BHLH transcription factor 381 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1562 Dere-ChrDere11 28502266 28504449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1562 171 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.447 1.45e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g1562 HLH 1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1473 12 26950394 26951512 Dere11g1562 11 28502266 28504449 CCT
Dere11g1562 11 28502266 28504449 Dere11g1562 11 28502266 28504449 ECH