Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1555 ATGAAATTGAGAGAACATTTGGATCAGTCATCAATTTATAGCCTTTCATACTTGTAGTATAAATCGCTAAACGCTGACATAAACCCTCTTACTCTTCCCAAGTCTCCCACTTTACAGCTTCGACAAGCCAAAGCTAAACAGGTTCTCTTCTGGGTATGTGCGGAGAAGATGGCCACAGTACCAGGGCAGCTCGTGTGGGAGATCGTCAAGAAGAACAACTGTTTTCTGGTAAAGGAGTTTGGTAGGGGAACTCAGAGTGTGCAGTTCAGCAAAGAGAGCAACAATCTTTACAACCTTAACTCTTTCAAATTCTCTGGTCTGGCAAACAAGAAAACCGTTACTATTCAGCCTGGCGGTAAAGATCAATCTGTGTTGCTGGCAACGACCAAGACAAAGAAGCAGAACAAACCTGCTTCGTTGCTTCACAGATCTGTCATGAAAAAGGAGTTCAGGAGAATGGCAAAGGCAGTAGAGAACCAGGTGGCAAATAACTACTACAGGCCTGATCTTAAGAAGGCAGCCCTTGCAAGGTTGAGTGCTGTTCATAGGAGCCTCAAAGTTGCCAAATCTGGTGTCAAAAAGAGGAACAGACAGGCTGTGAAGATCCCTGGTAGGAAGTGA 621 0.4461 MKLREHLDQSSIYSLSYLXYKSLNADINPLTLPKSPTLQLRQAKAKQVLFWVCAEKMATVPGQLVWEIVKKNNCFLVKEFGRGTQSVQFSKESNNLYNLNSFKFSGLANKKTVTIQPGGKDQSVLLATTKTKKQNKPASLLHRSVMKKEFRRMAKAVENQVANNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAVKIPGRK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1555 206 PANTHER 60S RIBOSOMAL PROTEIN L28 57 205 IPR002672 GO:0003735|GO:0005840|GO:0006412
Dere11g1555 206 Pfam Ribosomal L28e protein family 64 184 IPR029004 -
Dere11g1555 206 Gene3D - 62 189 - -
Dere11g1555 206 FunFam 60S ribosomal protein L28 61 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1555 Dere-ChrDere11 28419322 28422787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1555 57 199 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 74.126 3.78e-76 224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1465 12 26883360 26886980 Dere11g1555 11 28419322 28422787 CCT
Dere11g1555 11 28419322 28422787 Dere12g1465 12 26883360 26886980 ECH
Dere11g1555 11 28419322 28422787 Dere11g1555 11 28419322 28422787 ECH