Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1552 ATGCAAGACCCAACGGCATTCCAACCAATGAAACCCCACTTTCCTGAACAAGAACAGCTTAAGTGCCCTCGTTGTGATTCCACAAACACCAAATTCTGCTACTACAATAACTACAACCTCTCGCAGCCACGTCATTTTTGCAAGAATTGCAGAAGGTATTGGACCAAAGGCGGTGCCCTCCGAAACATACCTGTTGGTGGTGGAAGCCGAAAGAACACGAAACGTTCATCCACTACCAAACGCTCTTCTGCTTCATCATCTTCTCCATCGGCGTCATCTGCGTCTGCAGCTCAACCGGATCCTGACCCGACCCCGGCTTATGCCAACCCGAGTGGTCAGATGAACATTGGTGGGAGTTTCAGCTCACTTCTGGCATCGACTGGGCAGTGGGGGAATTTATTAGACGGTTTGAATTCAAATGGGTCTGGTTTGAAAATGATGCAACTGGGTGAATTTAGCGAGAATGTGGGTTCTGGCTCTGCGAAGAATTCGGATCCGGGTCGAAACCCGGTGATGGAGAGGCAGAGCAACGGCAATTCAGAGAGCTTTCTGGGTATGCAAATTGGCGATTCAAGCTGTTGGAATGGTAATAGCAGTGGGTGGTCTGATCTTGCAATATATACCCCAGGCTCAAGCTATCAGTAG 645 0.4915 MQDPTAFQPMKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSTTKRSSASSSSPSASSASAAQPDPDPTPAYANPSGQMNIGGSFSSLLASTGQWGNLLDGLNSNGSGLKMMQLGEFSENVGSGSAKNSDPGRNPVMERQSNGNSESFLGMQIGDSSCWNGNSSGWSDLAIYTPGSSYQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1552 214 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Dere11g1552 214 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Dere11g1552 214 MobiDBLite consensus disorder prediction 61 113 - -
Dere11g1552 214 MobiDBLite consensus disorder prediction 69 99 - -
Dere11g1552 214 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 168 IPR045174 GO:0003700|GO:0006355
Dere11g1552 214 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Dere11g1552 214 MobiDBLite consensus disorder prediction 155 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1552 Dere-ChrDere11 28379967 28380611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1552 11 134 C2C2-Dof Transcription Factor Family AT1G51700 58.088 1.06e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere11g1552 zf-Dof 2.4e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1456 12 26782934 26783554 Dere11g1552 11 28379967 28380611 CCT
Dere11g1552 11 28379967 28380611 Dere11g1552 11 28379967 28380611 ECH