Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1543 ATGTATTGGATGTCTCCCACCATCATTACCTCATTTATTTTCCTCGGCGTTGCCATCTTACAGAGTGCTCCATTGAATGCTGAGTCCGTCTTCACGGTTCTTGCAACCTTGAGGATCATGGGAGAACCTGTCAGAGTGATACCAGAGGCTCTTTCCATCATGATCCAAGTTAAGGTCTCCTTTGACCGTCTCAACACCTTTTTGCTTGAAGATGAGATAGAAAATGATGTTAAAAATAGAAATGCAGATACAAATGCGGTTAACTGTGTGGAGATTCAAGCGGGCAATTTCAGTTGGGATCAGGAATCTTGGTCCCCAACATTAAGAGATGTGACTTTAGAAATCAAATGGGGCCAAAAAATTGCAGTTTGTGGGCCAGTTGGAGCTGGTAAATCATCCCTCTTATATGCAATACTCAGAGAGATACCCAAAATTTCTGGAACGGTTAATGTAGGTGGAACTATTGCCTATGTTTCTCAAACTTCCTGGACCCAAAGTGGGACAATTCGGGATAATATACTCTACGGAAAGCCAATGGACAAAACTAGATATGAGAATGCCATTAATGTTTGTGCCTTAGATAAGGATATTAACAGCTTTATCCATGGTGATCTTACTGAAATAGGTCAGAGAGGGGTTAACATGAGCGGAGGACAAAAGCAACGGATTCAACTTGCTCGTGCAGTCTATAATGATGTAGATATCTATCTTCTTGATGATCCCTTCAGTGCCGTTGACGCACATACGGCTGCTATCCTATTCCATGTAATGAAAAAAGAAGAAGAAACTTTTAGATTCTGTTTGTTGGAAATGGAAAGGATGGATCAAAATAATGGAAACGAAGCGGAGCCTGAGATATTAGATTTAGATAAGCCAGAGGAGGCACGTGGTTTTCATCTTGTGGATGATAAGTGTGAGGCTAAGATTTGTACCGAGGGTCAACTTACACAAGAAGAAGAAATGGAGATTGGTGATGCTGTCTGGCAACCTTATTGGGATTATATCTCTATCTCCATGGGTTCATTGTTACCATATTTGAGCTTATTGGCACAATTGGCTTTTGTTACTTTGCAAGCTGCATCAACTTTTTGGCTAGCTCTTGCCATTGAAATCCCAAAAGTAACTAGTATCATTTTGGTTGGAGTTTACACGGTTATTTCATTTCTTAGCGTTGACTCTGTATACCTAAGGGCCTTTGGAGCTGCATATCTTGGTTTAAAAGCTTTTAAAGCCTTCTTTTCTTGTTTTACTAATGCTATCTTCAATGCTCCTATGCTGTTCTTTGACTCAACCCCAGTAGGGCGGATATTAACCTGCGCTTCATCAGATTTGAGTATCCTAGATTTCGATATACCATTCTCCATGAATTTTGCAGCATCAACAGGTTATTATCGATCTTCTGCAAGAGAGCTAATTAGAATTAATGAGACCACAAAAGCTCCAATGATGAATTTTGCAGCTGAGACATCACTTGGAGTAGTAACAGTGAGAGCATTTAACATGGCGGACAGATTTTTCCAGAACTACCTAAGGCTGGTAGATACAGATGCAACACTTTTCTTTCATTCTAATGCTGCCATGGAATGGTTCGCTCTAAGGATTGAAGTGCTCCAGAATTTGACACTCTTTGCTGCAGCTTTTTTGCTTGTTCTACTATCAAAGGGATACATGGCTCCTGGCCTTGTGGGACTTTCTCTTTCTTATGCTTTGGCTCTTACAAGCCTCCATCCGTTGGGGAGTACAATAGGCCTCCATCTTCTTGGCCTTCCATGGATCAGATATAGTCCAAATGCTCCATTAGTTCTAAAGGGAATCACTTGCACTTTTAAAGAAGGGAAAAGAATGGGAGTTGTAGGAAGGACTGGAAGTGGAAAAACAACACTCATAAGTGCGTTGTTCCGCTTAGTTGAGCCTGAAGGCGGAAAAATTCTTATAGATGGCCTTAACATATGCTCAATGGGGCTCAAGGACTTAAGAATGAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAGGGGTAGTATTAGAACCAACTTGGATCCTCTAGGCCTTTACACTGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTTAAGGCAACAGTTAGCAGTCTACCTAAACTATTAGACTCTTCTGTGAACGATGAAGGTGAAAATTGGAGTGTAGGACAACGCCAACTCTTTTGTCTTCGAAGAGTTCTTCTGAAGAGGAATAGAATTCTTGTGTTGTATGAAGCTACGGCTTCCATTGACTCAGCCACAGATGCCATTCTTCAACAAGTTATAAGGCATGAATTTGCAGACTGTACAGTTATAACTGTGGCCCATAGAGTTCCAACTGTAATAGATAGTAACATGGTTATGGTCCTTTCATATGGGGAAATGGTGGAGTATGATGAGCCTTCAAAGCTGATGGAGACAAACTCTTCATTTTCGAAGCAGGTGGCTGAATATTGGTCCACCTGCAAGAGAAATACCGCCCAAGCTATCAGCAGGCATCAGCATTAG 2514 0.4113 MYWMSPTIITSFIFLGVAILQSAPLNAESVFTVLATLRIMGEPVRVIPEALSIMIQVKVSFDRLNTFLLEDEIENDVKNRNADTNAVNCVEIQAGNFSWDQESWSPTLRDVTLEIKWGQKIAVCGPVGAGKSSLLYAILREIPKISGTVNVGGTIAYVSQTSWTQSGTIRDNILYGKPMDKTRYENAINVCALDKDINSFIHGDLTEIGQRGVNMSGGQKQRIQLARAVYNDVDIYLLDDPFSAVDAHTAAILFHVMKKEEETFRFCLLEMERMDQNNGNEAEPEILDLDKPEEARGFHLVDDKCEAKICTEGQLTQEEEMEIGDAVWQPYWDYISISMGSLLPYLSLLAQLAFVTLQAASTFWLALAIEIPKVTSIILVGVYTVISFLSVDSVYLRAFGAAYLGLKAFKAFFSCFTNAIFNAPMLFFDSTPVGRILTCASSDLSILDFDIPFSMNFAASTGYYRSSARELIRINETTKAPMMNFAAETSLGVVTVRAFNMADRFFQNYLRLVDTDATLFFHSNAAMEWFALRIEVLQNLTLFAAAFLLVLLSKGYMAPGLVGLSLSYALALTSLHPLGSTIGLHLLGLPWIRYSPNAPLVLKGITCTFKEGKRMGVVGRTGSGKTTLISALFRLVEPEGGKILIDGLNICSMGLKDLRMKLSIIPQEPTLFRGSIRTNLDPLGLYTDDEIWKALEKCQLKATVSSLPKLLDSSVNDEGENWSVGQRQLFCLRRVLLKRNRILVLYEATASIDSATDAILQQVIRHEFADCTVITVAHRVPTVIDSNMVMVLSYGEMVEYDEPSKLMETNSSFSKQVAEYWSTCKRNTAQAISRHQH 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1543 837 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 584 819 IPR003439 GO:0005524
Dere11g1543 837 Gene3D - 590 819 IPR027417 -
Dere11g1543 837 CDD ABCC_MRP_domain1 90 255 - -
Dere11g1543 837 SMART AAA_5 611 802 IPR003593 GO:0016887
Dere11g1543 837 SMART AAA_5 117 275 IPR003593 GO:0016887
Dere11g1543 837 Gene3D ABC transporter type 1, transmembrane domain 285 459 IPR036640 GO:0005524|GO:0016020
Dere11g1543 837 ProSitePatterns ABC transporters family signature. 215 229 IPR017871 GO:0005524|GO:0016887
Dere11g1543 837 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 459 - -
Dere11g1543 837 Pfam ABC transporter 108 242 IPR003439 GO:0005524
Dere11g1543 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 817 IPR027417 -
Dere11g1543 837 Gene3D ABC transporter type 1, transmembrane domain 1 76 IPR036640 GO:0005524|GO:0016020
Dere11g1543 837 FunFam Multidrug resistance-associated protein member 4 588 820 - -
Dere11g1543 837 CDD ABCC_MRP_domain2 591 803 - -
Dere11g1543 837 SUPERFAMILY ABC transporter transmembrane region 343 574 IPR036640 GO:0005524|GO:0016020
Dere11g1543 837 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 346 574 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1543 837 CDD ABC_6TM_ABCC_D2 346 575 IPR044726 GO:0140359
Dere11g1543 837 FunFam Multidrug resistance-associated protein 4 75 261 - -
Dere11g1543 837 Pfam ABC transporter 602 750 IPR003439 GO:0005524
Dere11g1543 837 Gene3D - 85 273 IPR027417 -
Dere11g1543 837 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 260 IPR027417 -
Dere11g1543 837 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 315 IPR003439 GO:0005524
Dere11g1543 837 Gene3D ABC transporter type 1, transmembrane domain 460 582 IPR036640 GO:0005524|GO:0016020
Dere11g1543 837 Pfam ABC transporter transmembrane region 376 453 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1543 837 Pfam ABC transporter transmembrane region 458 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1543 Dere-ChrDere11 28306360 28311384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1543 596 810 Calmodulin-binding Proteins AT2G36910 29.817 4.74e-28 120