Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1540 ATGAGCAAGATATCTTCTCCTTTGTGTGTAGACCTTGGAAATTGCTTAGTTTCTAAACATTCGCAAAGAAATACCATGTCTGAACCTTTGCTGTGTGAAGAAGTCAAAAAGAGCCAAACAGCACTAAGCCAAGCTAGTTGTTTCAACAAACTGACATTTTCCTGGATTAACCATGTACTCTCTTTGGGTCACTCAAAGACACTATCTCTTGGAAAGATCCCTCCTCTAGAGACTGAAGACAAAGCTAAATTATCCTACCAGAAGTTTGCTAAAGCATGGGATTCCTTGTTAAGCAAAAGAAGCTCAAACAGAAACAGTTCCAAGAACTTGGTCATTAGAGCTATAATAAGTGTCTTTCTGAAAGAGAATATCTTCATAGCAATCTCTGCATTGGCTAGGTCAACTTCTGCTGCTCTTTCTCCACTGCTAATCTATGCTTTTGTGAAGTACTCGATTAACAACAACGAAAGAAACATCTATGAGGGTGTCGCTATATTTGGGTGGCTGTTTCTTTCGAGATTGGTGGAGTCTTTGTGTCAGAGGCATTGGTATTTCAACTCAAAGAGGACAGGCATGAGAATGAGATCAACTTTAATGGTGGCAGCCTATGGAAAACTTTTAAAGCTTTCGAGTTTGGGAAGGAGGAGGCATTCCTCTGGGGAGATTGTGAATTACATAGCAGTTGATGCTTATAGGATGGGAGAATTCTTATGGTGGTTCCACTCAGGATGGAGCCTAGCATTCCAACTATTCTTAGCCATTGGGGTCCTATTTTGGGTTGTGGGTCTAGGTGCTCTTCCTGGTTTAGTCCTCCTCCTCATCTCTGCCCTTCTTAATGTTCCATTTGCAATGAAGTTAAAGAAGTGTCAGTCAGAAGTCCTGGTTTGCCAAGATCAGAGACTCAGGACAACATCAGAGATCCTGAACAATATGAAGATCATCAAGTTGCAATCTTGGGAGGACAAGTTTAAGAGCTTGGTTGAATCACTTCGTGATAGCGAGTTCAAATGGGTGGCTGAGACACAGTTCACCAAGGCTTATGGCTCAGTTCTGTATTTCATTTCTCCAACCATTATCTGTGCAGTAATTTTCTTAGGATGTATACTCTATAAGAGTGCCACTTTAGATGCTGGCGTTATTTTCACTGTTCTTGCTACAATGAGGAGCATGGGAGAACCTGTGAGGTTTATACCAGAGGCTCTTTCTGTCATGGTCCAAGTTAAGATCTCACTTGACAGGCTTAATACCTTTCTCCTGGAAGATGAGATAGAAGGTGATGAACGGAGGAGCATTTCAATGCCATATTCAGATAAAAGCATTGAAGTAATAGCAGCTGATTTCTATTGGGATCATGAATCACTGGCCCCAACTTTGAGAGATATCAACTTAGAGATTAAAAGGGGGCAAAAGGTTGCAGTTTGTGGACCAATAGGAGCAGGAAAATCCTCTCTCTTGTATGCTATACTTGGAGAGATGCCAAACATCTCTGGAACTGTTAGTGCACATGGAACAATAGCATATGTTTCTCAAACTTCTTGGATCCAAAGTGGGACAATTCGTGATAACATACTCTTTGGAAAGACATTGGAAGAAACTAGATACAAAAATGCCATTGAAACATGCGCTTTGGATAAGGATATAAATGGTTTTAGCCATGCTGATCTTACAGAAATAGGTCAGAGAGGGATTAACTTGAGTGGAGGACAGAAGCAGAGGATCCAACTTGCCCGAGCTGTCTATGATGATGCTGATATATATATCCTTGATGACCCTTTTAGTGCAGTGGACGCACACACTGCTTCAGTTCTATTTCATGACTGTGTCATGAATGCTCTGAGAGAGAAAACAGTCATCCTAGTTACTCATCAAGTGGAGTTTCTCTCAGAAGTTGACAACATTCTTGTTATAGAGGGAGGTCGTATAGCTCAAGCAGGAATCTACAAGGAGCTCATGACATTTGGAACAACCTTTGAACAACTCATAGCTGCTCACAGAGATGCAATGATTGGACTGGGTGATCTTCATCAAAACCAGGAAGAATGTAGAGAAGTAGATACAATTATTCCACAGGAGAATTACAGTGAAGGGGAGATTCGTGAGACCAGTCAACTTACACAAGAAGAACAAAGAGAAATGGGAAGTGCAGGGTGGAAATTGTTCTTGGATTATGTCCTTATCGCCAAGGGTCTGCATCTTGTGTGTTTAGGCTCAATAGCTCTGCTGGGTTTTGCTATTTCTCTGGCTGTATCATCTTATTGGCTTGCTCTGGCCATTCAAATCCCAAAGATCACTGATGGAATGCTGGTTGGAGTTTACACTGGGATGTCAGTTCTTAGTGCTGTTTTTGTTTACATTAGGTCTCTTTTTGTAGCTCATCTTGGATTAAAGGCTTCCAAAGCCTTCTTCTCTGGTTTCAATTCTGTCATTTTCAATGCTCCCATGTTGTTTTTTGACTCAACTCCCGTAGGGCGGATTTTAACCAGGGCTTCATCAGATTTGAGTACTCTGGATTTTGACATACCTTTTGCCACAATTCATGTCCCACAAACTGCAATTGAACTTCTCATAGGAATTGTGATAATGGCTTCTGTTACATGGGAAGTTCTAATCGTTGCCATTGTAGCTACAGCAGCTGCAAAATACATTATGGGCTACTACCAAGTATCTGCAAGGGAACTAGTGAGACTCAACGGAACAACGAAAGCTCCAGTTGTGAATTGCACAACAGAGACATTAGCAGGAGTGGTCACTATGAGGGCTTTCAAGATGGTCGATCGGTTCTTCCAATCATTTGTAGATCTGGTTGACACAGATGCTACACTATTCTTGCATACTAATGCTGCCATGGAGTGGTTACTTTTACGTATGGAAATGCTTCAGAATTTGATCCTTTTCACAATAGCTTTTCTAATTGTATTTCTTCCAAAGGAATATATATCCTCAGGGCTTGTGGGACTTGGTATGGCTTATGCTTTGTCATCAACAAGAACCCAGACCTATTTTACTCAATGGTACTGTAAATTATCAAATTACATCATCTCTGTTGAAAGAATCATACAATTCATGCAGATACCGCAAGAGCCTCCAAAAGAAGTGGAGGATAAAATGCCACCATCTTCATGGCCTTCCAAGGGAAGGATAGAGTTGAAAGACTTGAAGGTTAAATATCGTCCAGATTCTCCTTTAGTTCTTGATGGTATCACTTGTATTTTCAGTCAAGGGACTAAAATAGGAGTTGTAGGAAGGACTGGGAGTGGAAAATCCACACTTATAAGCTCACTGTTTCGTTTAGTAGAGCCTACAAGTGGTGAAATCCTTATAGATGGGATTAACATATGCTCAATAGGCCTGAAGGATTTAAGAATGAAACTGAGCATCATTCCTCAAGAGCCAACTCTTTTCAGGGGTAGTGTTCGAACCAACATAGATCCACTAGGCCAGTTTTCTGACGAAGAGATATGGAAGGCTTTAGAGAAGTGTCAGCTCAAGGAGGCAATAAGTTGTCTGCCAAATCTACTAGACTCATCTGTGAATGATGAGGGAGAGAACTGGAGCGTAGGTCAGCGCCAACTCTTTTGTCTCGGAAGAGTTCTTTTAAGAAGGAACAGAATTCTTGTTCTAGATGAAGCAACTGCTTCCATTGATTCTGCAACAGATGCCATCTTACAAAGAATCATCAGGCAAGAATTCTCAGATTGTACCATTATCACTGTGGCTCACCGAGTTCCAACTGTTTTAGACAGTGACATGGTTATGGTTCTTTCCTATGGGAAAATGGTGGAGTATGATGAACCATCAATGCTTCTTGAGGCCAGTTCTTCTTCATTCTCTAAGCTTGTAGCAGAATACTGGTCTAGCAGTAGGAACTCTTCTTAA 3876 0.4115 MSKISSPLCVDLGNCLVSKHSQRNTMSEPLLCEEVKKSQTALSQASCFNKLTFSWINHVLSLGHSKTLSLGKIPPLETEDKAKLSYQKFAKAWDSLLSKRSSNRNSSKNLVIRAIISVFLKENIFIAISALARSTSAALSPLLIYAFVKYSINNNERNIYEGVAIFGWLFLSRLVESLCQRHWYFNSKRTGMRMRSTLMVAAYGKLLKLSSLGRRRHSSGEIVNYIAVDAYRMGEFLWWFHSGWSLAFQLFLAIGVLFWVVGLGALPGLVLLLISALLNVPFAMKLKKCQSEVLVCQDQRLRTTSEILNNMKIIKLQSWEDKFKSLVESLRDSEFKWVAETQFTKAYGSVLYFISPTIICAVIFLGCILYKSATLDAGVIFTVLATMRSMGEPVRFIPEALSVMVQVKISLDRLNTFLLEDEIEGDERRSISMPYSDKSIEVIAADFYWDHESLAPTLRDINLEIKRGQKVAVCGPIGAGKSSLLYAILGEMPNISGTVSAHGTIAYVSQTSWIQSGTIRDNILFGKTLEETRYKNAIETCALDKDINGFSHADLTEIGQRGINLSGGQKQRIQLARAVYDDADIYILDDPFSAVDAHTASVLFHDCVMNALREKTVILVTHQVEFLSEVDNILVIEGGRIAQAGIYKELMTFGTTFEQLIAAHRDAMIGLGDLHQNQEECREVDTIIPQENYSEGEIRETSQLTQEEQREMGSAGWKLFLDYVLIAKGLHLVCLGSIALLGFAISLAVSSYWLALAIQIPKITDGMLVGVYTGMSVLSAVFVYIRSLFVAHLGLKASKAFFSGFNSVIFNAPMLFFDSTPVGRILTRASSDLSTLDFDIPFATIHVPQTAIELLIGIVIMASVTWEVLIVAIVATAAAKYIMGYYQVSARELVRLNGTTKAPVVNCTTETLAGVVTMRAFKMVDRFFQSFVDLVDTDATLFLHTNAAMEWLLLRMEMLQNLILFTIAFLIVFLPKEYISSGLVGLGMAYALSSTRTQTYFTQWYCKLSNYIISVERIIQFMQIPQEPPKEVEDKMPPSSWPSKGRIELKDLKVKYRPDSPLVLDGITCIFSQGTKIGVVGRTGSGKSTLISSLFRLVEPTSGEILIDGINICSIGLKDLRMKLSIIPQEPTLFRGSVRTNIDPLGQFSDEEIWKALEKCQLKEAISCLPNLLDSSVNDEGENWSVGQRQLFCLGRVLLRRNRILVLDEATASIDSATDAILQRIIRQEFSDCTIITVAHRVPTVLDSDMVMVLSYGKMVEYDEPSMLLEASSSSFSKLVAEYWSSSRNSS 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1540 1291 Pfam ABC transporter 1064 1212 IPR003439 GO:0005524
Dere11g1540 1291 Gene3D ABC transporter type 1, transmembrane domain 695 1028 IPR036640 GO:0005524|GO:0016020
Dere11g1540 1291 FunFam ABC transporter C family member 10 107 422 - -
Dere11g1540 1291 CDD ABC_6TM_ABCC_D1 125 414 IPR044746 GO:0140359
Dere11g1540 1291 Pfam ABC transporter transmembrane region 124 386 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1540 1291 Pfam ABC transporter transmembrane region 767 974 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1540 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1281 IPR003439 GO:0005524
Dere11g1540 1291 SUPERFAMILY ABC transporter transmembrane region 120 424 IPR036640 GO:0005524|GO:0016020
Dere11g1540 1291 CDD ABCC_MRP_domain1 440 640 - -
Dere11g1540 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 442 663 IPR003439 GO:0005524
Dere11g1540 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 662 IPR027417 -
Dere11g1540 1291 ProSitePatterns ABC transporters family signature. 565 579 IPR017871 GO:0005524|GO:0016887
Dere11g1540 1291 Gene3D ABC transporter type 1, transmembrane domain 116 420 IPR036640 GO:0005524|GO:0016020
Dere11g1540 1291 Pfam ABC transporter 458 592 IPR003439 GO:0005524
Dere11g1540 1291 FunFam ABC transporter C family member 3 1030 1282 - -
Dere11g1540 1291 Gene3D - 450 681 IPR027417 -
Dere11g1540 1291 SUPERFAMILY ABC transporter transmembrane region 733 1029 IPR036640 GO:0005524|GO:0016020
Dere11g1540 1291 CDD ABC_6TM_ABCC_D2 732 1022 IPR044726 GO:0140359
Dere11g1540 1291 FunFam ABC transporter C family member 5 428 672 - -
Dere11g1540 1291 Gene3D - 1030 1282 IPR027417 -
Dere11g1540 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 124 406 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1540 1291 SMART AAA_5 1073 1258 IPR003593 GO:0016887
Dere11g1540 1291 SMART AAA_5 467 640 IPR003593 GO:0016887
Dere11g1540 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1039 1272 IPR027417 -
Dere11g1540 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 735 1010 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere11g1540 1291 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 43 1286 - -
Dere11g1540 1291 FunFam ABC transporter C family member 5 697 1028 - -
Dere11g1540 1291 CDD ABCC_MRP_domain2 1045 1265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1540 Dere-ChrDere11 28282865 28289445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1540 440 668 Calmodulin-binding Proteins AT2G36910 28.235 3.53e-18 89.0