Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1535 ATGGAGAGAAAACTTGAGCTCCTTCATGGAACAATTGAAGCCACCATCTTCAATGCCACTCCATATGCACCTGCATTTCCCTTTAATTGTATATGTGCAAATGGGAAGCCTGCATATGTGACCATCAAGCTAGGCAACAAGAAGGTAGCTAAGACAAGTCAAGAACGAGACCGCGTGTGGAACCAAACCTTTCAGATCCAATGTGCTCACCCCGCTGATTCAACAATTACCCTCACATTGGAAACATCATGCTCCATATTGGGGAGATTCCATATTCAGGCCCAGCAGTTACTGAAAGAAGAAAGTTTGATAAATGGTTTCCTCCCTCTCCTCATGGAAAATGGAAAATCAAACCCTCAACTCAAGTTAAGGTTTGTATTGTGGTTTAAACCAGCAGGACTTGAACCAAGTTGGGACAAGATGCTAAGGAATGGGGAATTTCAAGGCTTAAGGGATGCCACGTTTCCACAAAGGTCCAATTGTCAGGTCAAGCTTTACCAAGATGCTCACCTTTCTTTTACTTTCCAACCTCCCTTTGATCATTGTGGAGCTCCAAGAAGGCTATGGGAGGATGTGTATAAAGCCACTGAGGGCGCAAAGTACTTAATTTATATTGTAGGGTGGTCCTTCAATCCTAAGATGGTTCTGGTTAGAGATCCAGAAACAGAAATCCCATACGCAAGAGGAGTGAAGTTGGGTGAGCTATTAAAGAAGAAGGCAGAGGAAGGAGTGGCAGTGAGGGTAATGCTTTGGGATGATGAAACATCCTTGTCATTTATTAAGAACAAGGGTGTGATGAATACCCATGATGAGGATGCTTTTGCATACTTCAAACATACAAAAGTTATATGCAGAAAGTGTCCCAGAATACACCATAAGTTCCCCACAGTCTTTGCTCACCATCAGAAGACTATAACTGTCGACACCAAAGCATCGAACTCTGTGAATGATAGAGAAATTATGAGCTTTGTTGGTGGGTTAGATTTGTGCGATGGCAGGTACGACACAGAGCAGCATTCATTGTTTCAAACACTTAATAGTGAATCCCATCGCTATGATTTCTATCAGACAAACATTGCAGGTGCTAGTCTTAACAAAGGAGGGCCAAGGGAGCCTTGGCATGATGCTCATGCTTGTGTTATAGGTGAAGCTGCTTGGGATGTGTTAACAAATTTCGAGCAAAGATGGACGAAACAGTGTGATGCTTCCCTTTTAGTCCCTGCAAGTGCCTTAGCAAATCTCATGCCCCAGACTTGCTCAAGCATTCCCATTGAGAGGAATTGGAAAGTTCAAGTATATAGGTCAATTGATCATGTCTCAGCTAGCCAACTGTTTAGAAAGCTTACTGTGGAGAGAAGCATCCATGAAGCTTATGTCGAAGCAATTAGGCGTGCAGATAGGTTTATCTACATAGAAAATCAGTATTTCATTGGGGGATGCCATTTGTGGGACAAAGACAAGCACAGTGGGTGCAGAAATTTAATTCCCATTGAGATTGCGCTCAAGGTGGTGAGTAAGATTAAAACAAAGGAGAGGTTTGCAGTGTATGTAGTGATTCCAATGTGGCCAGAAGGACTGCCCGAAAGTGAAACAGTTCAGGACATTCTACATTGGACCAGAGAAACAATTTCAATGATGTATAGGTTGATTGGAGAAGCGATACAGGAGAGTGGAGAAGCAGGGCATCCAAGAGACTACTTGAATTTCTTTTGCCTAGCAAATAGGGAACAGAAGGGAGAAGGGGAGTATCTCCCACCACATTCTCCTCATCCTGACACACAATACTGGAATGCCCAAAAAAGTAGGAGGTTCATGGTGTATGTCCACTCCAAGCTCATGATAGTGGACGACCTGTACTTGTTGATAGGGTCAGCTAACGTGAACCAGAGATCCATGGATGGACAAAGAGACACGGAGATAGCCATAGGTTGCTACCAATCTCAAGATGGTGATTCCGATCACCAAATAACTCACCGAGGTGAGATTCACGCATACAGAATGTCACTGTGGTATGAGCACAGTGGGTGCACAGAGGCATCATTGCTGGAGCCAGAGAGCTTGGAATGCGTGCGGAAAATGCGATCGATAGGAGATCGAATGTGGGCAATATATAGCGGCGAAGAAATTGTGGACATGGAAGGTGTTCATCTCGTGAGCTACCCTTTGAAGGTGACGCCAGAAGGTTGTGTGGAGGATTTGGGAGACAGTCAAGGTCGTTTTCCTGATACACTGTGTCCAGCGAAGGGGAAGAGATCGAAAGTGTTGCCGCCAATCTTCACTACTTAG 2286 0.4427 MERKLELLHGTIEATIFNATPYAPAFPFNCICANGKPAYVTIKLGNKKVAKTSQERDRVWNQTFQIQCAHPADSTITLTLETSCSILGRFHIQAQQLLKEESLINGFLPLLMENGKSNPQLKLRFVLWFKPAGLEPSWDKMLRNGEFQGLRDATFPQRSNCQVKLYQDAHLSFTFQPPFDHCGAPRRLWEDVYKATEGAKYLIYIVGWSFNPKMVLVRDPETEIPYARGVKLGELLKKKAEEGVAVRVMLWDDETSLSFIKNKGVMNTHDEDAFAYFKHTKVICRKCPRIHHKFPTVFAHHQKTITVDTKASNSVNDREIMSFVGGLDLCDGRYDTEQHSLFQTLNSESHRYDFYQTNIAGASLNKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDASLLVPASALANLMPQTCSSIPIERNWKVQVYRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFIYIENQYFIGGCHLWDKDKHSGCRNLIPIEIALKVVSKIKTKERFAVYVVIPMWPEGLPESETVQDILHWTRETISMMYRLIGEAIQESGEAGHPRDYLNFFCLANREQKGEGEYLPPHSPHPDTQYWNAQKSRRFMVYVHSKLMIVDDLYLLIGSANVNQRSMDGQRDTEIAIGCYQSQDGDSDHQITHRGEIHAYRMSLWYEHSGCTEASLLEPESLECVRKMRSIGDRMWAIYSGEEIVDMEGVHLVSYPLKVTPEGCVEDLGDSQGRFPDTLCPAKGKRSKVLPPIFTT 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1535 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Dere11g1535 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 37 131 IPR035892 -
Dere11g1535 761 Pfam Phospholipase D C terminal 680 750 IPR024632 -
Dere11g1535 761 PANTHER PHOSPHOLIPASE D 4 743 IPR015679 -
Dere11g1535 761 SMART pld_4 296 333 IPR001736 GO:0003824
Dere11g1535 761 SMART pld_4 604 631 IPR001736 GO:0003824
Dere11g1535 761 Pfam Phospholipase D Active site motif 607 631 IPR001736 GO:0003824
Dere11g1535 761 Pfam Phospholipase D Active site motif 297 333 IPR001736 GO:0003824
Dere11g1535 761 Gene3D Endonuclease Chain A 172 424 - -
Dere11g1535 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 631 IPR001736 GO:0003824
Dere11g1535 761 SUPERFAMILY Phospholipase D/nuclease 422 690 - -
Dere11g1535 761 CDD PLDc_pPLD_like_2 446 648 - -
Dere11g1535 761 Pfam C2 domain 38 104 IPR000008 -
Dere11g1535 761 SUPERFAMILY Phospholipase D/nuclease 141 408 - -
Dere11g1535 761 Gene3D Endonuclease Chain A 445 649 - -
Dere11g1535 761 PIRSF PLD_plant 3 761 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1535 Dere-ChrDere11 28219534 28223373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1535 30 761 Phospholipase D Gene Family (Wang group) AT1G55180 63.392 0.0 989
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1535 11 28219534 28223373 Dere11g1535 11 28219534 28223373 ECH