Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1532 ATGAGCCGCTACGACAGCCGTTCCGGCGACCCCACTTCTTACCGTGACCGGAGGAGTGATTTGGGCCTAGGTGCATCGACAGGATATGGTGGTTCAGCTCACTCTTCATCAGGCAGGGGAGATTACAATGATGGTGGGACACCAAGGAAATTGAATTTGGATGGGTTGCCTCATTTCGAGAAAAACTTCTATAAAGAATCACCAGCAGTGAGAGCATTGACAGAGGAGGAGGTTAATGAGTATCGGCAGCTGAGGGAAATAACTGTTGAAGGCCAAGATGTCCCAAAACCTGTCAAGAGCTTTCATGATGTTGGTTTTCCAGAATATGTACTGCAAGAAATTTCAAAAGCTGGCTTTGTTGAACCTACACCTATTCAAGCTCAAGGTTGGCCAATGGCTCTAAAGGGGCATGATCTGATGGGCATTGCAGAAACAGGATCAGGGAAGACACTTGCGTACTTGTTGCCTGCAGTAGTGCATGTTAATGCCCAACCAATTCTTGATCCTGGTGATGGACCAATTGTGTTAGTTTTGGCTCCAACTCGCGAACTTGCTGTCCAAATACAGCAAGAGGCATTTAAGTTTGGTGCATCATCAAAGATTAAAAGTACATGCATATATGGTGGGGTTCCAAAGGGACCTCAGGTGCGTGATCTCCGGAAAGGTGTTGAAATCATAATTGCCACTCCGGGAAGGTTGATTGATTTGCTTAAGTTGAATCATACAAATTTGCGGAGGGTTACATACCTTGTATTGGATGAGGCTGATAGAATGTTAGACATGGGATTTGCACCTCAGATACGGAAAATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCCACCTGGCCTAAGGAGGTTGAAAAATTGGCAAAGCAGTTCGTTTATAACCCATACAAGGTGATTATTGGTTCACCAGATTTGAAAGCTAACCATGCAATACAGCAATATGTTGACATTGTTTCTGAAAAGCAGAAATATGATAAATTGGTAAAGTTACTGGAGGATATAATTTATGGCAGCCGAATACTGATATTCATGGATACCAAGAAAGGATGTGATCAGATAACTGAGCAGCTTCGCAGGGATTGTTGGCCTGTCCGTTCAATTCATGGAGACAAAAGTCAAGCAAAGAGGGATTGGGTGCTCTCAGAGTTTAGATCTGGAAAGACCCCTGTTATGATTGCAACAGATATTGCAGCTCGTGGTCTTGATGTGAAGGACGTGAAATATGTAATAAACTATGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGGTTGGCAGAGCTGGCGCAAAAGGAACGGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCCAAGGATCTGATAGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCCATGGGGCGTGGTGCCCCTCCTCCACCTTCAGGTCATGGAGGTTTCCGAGACCGTGGGAGGGGTTATGGCAGTGGTCGCACATGGAGCTGA 1518 0.4552 MSRYDSRSGDPTSYRDRRSDLGLGASTGYGGSAHSSSGRGDYNDGGTPRKLNLDGLPHFEKNFYKESPAVRALTEEEVNEYRQLREITVEGQDVPKPVKSFHDVGFPEYVLQEISKAGFVEPTPIQAQGWPMALKGHDLMGIAETGSGKTLAYLLPAVVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEAFKFGASSKIKSTCIYGGVPKGPQVRDLRKGVEIIIATPGRLIDLLKLNHTNLRRVTYLVLDEADRMLDMGFAPQIRKIVSQIRPDRQTLYWSATWPKEVEKLAKQFVYNPYKVIIGSPDLKANHAIQQYVDIVSEKQKYDKLVKLLEDIIYGSRILIFMDTKKGCDQITEQLRRDCWPVRSIHGDKSQAKRDWVLSEFRSGKTPVMIATDIAARGLDVKDVKYVINYDFPGSLEDYVHRIGRVGRAGAKGTAYTFFTAANARFAKDLIAILEEAGQKVSPELAAMGRGAPPPPSGHGGFRDRGRGYGSGRTWS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1532 505 SMART ultradead3 118 321 IPR014001 -
Dere11g1532 505 MobiDBLite consensus disorder prediction 1 17 - -
Dere11g1532 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Dere11g1532 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Dere11g1532 505 Gene3D - 72 311 IPR027417 -
Dere11g1532 505 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Dere11g1532 505 Gene3D - 312 477 IPR027417 -
Dere11g1532 505 CDD SF2_C_DEAD 318 448 - -
Dere11g1532 505 MobiDBLite consensus disorder prediction 1 53 - -
Dere11g1532 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Dere11g1532 505 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Dere11g1532 505 MobiDBLite consensus disorder prediction 478 505 - -
Dere11g1532 505 CDD DEADc_DDX5_DDX17 110 305 - -
Dere11g1532 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Dere11g1532 505 SMART helicmild6 358 439 IPR001650 -
Dere11g1532 505 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
Dere11g1532 505 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 477 - -
Dere11g1532 505 FunFam ATP-dependent RNA helicase RhlB 309 481 - -
Dere11g1532 505 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1532 Dere-ChrDere11 28182216 28190375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1532 86 459 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 7.83e-78 248