LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g1523	ATGGTGCTGCAGCTGTTTTTCCTGTTAATTAAGCTACATTTATTTATCAGTACCGCACACCTTCATGAATATGCAGCCACCAATCCACTTCATTCCAGAAGCCATACAAGTATTGCTCTTCCACCATCCAAGTCATCATCTGGAGTTCCTGCAAGTGTTGCACTTCCCCCTTCCAAGTCATTATCTAAAGCTCCTTCCGAGGAATGGATCCATGGCTTAGTAGATTCTCCAATATTACATCATAAGCATCACTATTCCAAAAGAAAATCCCCAGGGCCAACTTACTTGGTCCATCCACCTACCTATAGTCATCAAGGTTCTTCTGTCTTCCCATCACAACCTCCTTTCTTTTCACCAAAGAGCTGGAATTTGCCTGCGCCTGCACCATCACCTGCAGTTCTATCAGGCCACTTAAATGTGCCTTCACCTTCACCCAGAATTTCACCTCAAGGGTCATCATCGAGGAAGATGAAGACTCCCCCACCAGCACCTATTTTGGGTCTGCCTCCTCCGCCTCCTAATAAGGATTGCATGTCGGTGACTTGCTCAGAGCCCTTTACATACACACCTCCTGGATCACCTTGTGGTTGTGTATGGCCACTTCAAGTTAAACTCAGCCTTAGCATTGCAATATACAAGTTCTTTCCGCTGGTTTCAGAGCTAGCCAAGGAAATTGCAGCCAGTGTTTCGCTGAATCATAACCAAGTTCGCATTGTGGAAGCTGATGAAGCTGGTCAGCAACTAGAGAAAACTATTGTTCTCATAAACTTGGTACCTAAAGGATCAAGATTTGACTATACAACAGCTCTTTTAATATACAAAAAATTCTGGCACCAGGAGATCCATGCAGATGATTCACTCTTTGGTGCCTATGATGTACTTTTTGTTCATTATCCAGGTCTTCCTCCTTCTCCACCTTCAGTTCCCTCAAGCATTTCTAGTACAGATGATAGGCCATTATACCCTGGGCGTGACAACAATGGAACAATAATGAAACCTTTGGGAGTAGATGTACCAAGGAAAGAAAGAAAGGGGAGTCATAAAAGCGTGACTTTAATTATAGTGCTGTCATCTTTTACGGCTTTTGTTATATTTGTAGGAGTTGCATGGCTTTGTCTGATGAGATGTGGCTCTTGTGTTCATGAGTCTAAACAAATTCCAAATTCGATTCCATCTTCAAAACTAAAGGCAGGGACTGCCAGGTCATTGACTTATAGGAGCATGCCAGGTTCTGGATCTATGTCCTTGAGTTCTAGAACACTAGCATATACAGGATCTGCCAAGATTTTTACTTTGAATGACATTGAGAAAGCAACCAACAACTTTGATGCTTCAAGAATATTAGGAGAAGGAGGCTTTGGGCTTGTTTATAAAGGGGTTCTATATGATGGGAGGGATGTGGCTATGAAGATTCTCAAGAGAGATGATCAGCATGGTGGCCGTGAGTTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTGCACCATAGAAATTTAGTTAAATTGATAGGTATATGCATGGAGAAACAGACTCGTTGTCTAGTCTATGAGCTTGTCCCTAATGGAAGTTTGGAATCCCACTTACATGGTAATCAAATGCACATTTCATGGATATCATGTGCTACTTTAGAAGTCAAAATCCATGGATATTCTTCAGAGGCTAACTTTGGAGTGCTTTCTATGTTCCCAGGTGCTGACAAGGAAACTGATCCACTTGATTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTCGGGGGCTGGCTTATCTGCATGAAGATTCAAATCCATGTGTCATTCATCGGGATTTCAAGTCCAGCAACATCTTGTTGGAACATGATTTTACACCCAAGGTTTCAGATTTTGGATTAGCTCGAACTGCATTGGACGAGGGAAACAAGCACATCTCAACTCATGTTATGGGAACATTTGGCTACCTAGCGCCTGAATATGCAATGACAGGCCATCTTCTGGTCAAAAGTGATGTTTACAGTTATGGAGTTGTGCTCATTGAGCTACTAACTGGAAGAAAGCCTGTAGATTTATCACAACCACCAGGTCAAGAAAACCTTGTGGCTTGGGTTCGTCCACTTCTCACAAGTAAGGAGGGTTTACAGACGATCATTGACCCAGTTATAAAGCCCAACATCTCTGTTGATACTGTTATAAAAGTTGCAGCAATCGCATCAATGTGTGTTCAACTGGAAGTCTCTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCTTTAAAGCTGGTATGCAGTGAGTTTGAGGAAGCAAGCAATAAAAGGTTAAGGAGTTTCAGAGAAGAGGGTCTTCGAACCAACGTAAATGGACAATCTTCTAGAATTTCAGGCGAGATAGTGGACTTTTTGGATAATGAAACCAAGGTAGCATTATCGGCATCTGAATTTCTTGGTACATCAGGCCAGGATTTTGAGTCATTCAGGAGGCATTCCACTTCATGGCCTCTCACTACAGGGAAGAAAAGTCAGTTCTGGCAGAAACTGAGGAGTTTCTCTAGAAAGAGCATTAGTGAGCATAGATTTTCTGCTAAACTATCGTCTAGTTCTCATTAG	2577	0.4272	MVLQLFFLLIKLHLFISTAHLHEYAATNPLHSRSHTSIALPPSKSSSGVPASVALPPSKSLSKAPSEEWIHGLVDSPILHHKHHYSKRKSPGPTYLVHPPTYSHQGSSVFPSQPPFFSPKSWNLPAPAPSPAVLSGHLNVPSPSPRISPQGSSSRKMKTPPPAPILGLPPPPPNKDCMSVTCSEPFTYTPPGSPCGCVWPLQVKLSLSIAIYKFFPLVSELAKEIAASVSLNHNQVRIVEADEAGQQLEKTIVLINLVPKGSRFDYTTALLIYKKFWHQEIHADDSLFGAYDVLFVHYPGLPPSPPSVPSSISSTDDRPLYPGRDNNGTIMKPLGVDVPRKERKGSHKSVTLIIVLSSFTAFVIFVGVAWLCLMRCGSCVHESKQIPNSIPSSKLKAGTARSLTYRSMPGSGSMSLSSRTLAYTGSAKIFTLNDIEKATNNFDASRILGEGGFGLVYKGVLYDGRDVAMKILKRDDQHGGREFLAEVEMLSRLHHRNLVKLIGICMEKQTRCLVYELVPNGSLESHLHGNQMHISWISCATLEVKIHGYSSEANFGVLSMFPGADKETDPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLIELLTGRKPVDLSQPPGQENLVAWVRPLLTSKEGLQTIIDPVIKPNISVDTVIKVAAIASMCVQLEVSQRPFMGEVVQALKLVCSEFEEASNKRLRSFREEGLRTNVNGQSSRISGEIVDFLDNETKVALSASEFLGTSGQDFESFRRHSTSWPLTTGKKSQFWQKLRSFSRKSISEHRFSAKLSSSSH	858

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g1523	858	FunFam	Receptor-like serine/threonine-protein kinase ALE2	553	766	-	-
	Dere11g1523	858	Gene3D	Transferase(Phosphotransferase) domain 1	559	772	-	-
	Dere11g1523	858	SUPERFAMILY	Protein kinase-like (PK-like)	422	749	IPR011009	-
	Dere11g1523	858	MobiDBLite	consensus disorder prediction	33	63	-	-
	Dere11g1523	858	MobiDBLite	consensus disorder prediction	33	53	-	-
	Dere11g1523	858	CDD	STKc_IRAK	448	750	-	-
	Dere11g1523	858	ProSiteProfiles	Protein kinase domain profile.	442	752	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1523	858	MobiDBLite	consensus disorder prediction	141	157	-	-
	Dere11g1523	858	Gene3D	Phosphorylase Kinase; domain 1	414	517	-	-
	Dere11g1523	858	Pfam	Protein tyrosine and serine/threonine kinase	445	749	IPR001245	GO:0004672\|GO:0006468
	Dere11g1523	858	MobiDBLite	consensus disorder prediction	133	161	-	-
	Dere11g1523	858	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	598	610	IPR008271	GO:0004672\|GO:0006468
	Dere11g1523	858	ProSitePatterns	Protein kinases ATP-binding region signature.	448	470	IPR017441	GO:0005524
	Dere11g1523	858	PANTHER	OS01G0750732 PROTEIN	169	765	-	-
	Dere11g1523	858	FunFam	receptor-like serine/threonine-protein kinase ALE2	415	517	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g1523	Dere-ChrDere11	28041979	28047005	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g1523	174	847	Receptor kinase-like Gene Family	AT5G56890	57.101	0.0	734

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_Extensin	Dere11g1523		PK_Tyr_Ser-Thr	1.1e-47	CL0016