Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1520 ATGGTGATGGTTTCTTTAACTCTGGGCGAATTGCATTCCGTCCCACACTTTCCCACCACAGGCACTCTGGGCTTTGCTTATTGCATTTCGAGATTCAGGACTCAGAGGCAGGGCCAGAGACTGTGGCTGGGAACTTTCAACACGGCAAAGGAAGCAGCCAGGGCCTATGACGGGGCTGCTTACTCCATGAGAGGCCCATTGGCAATCCTCAACTTCCCACATGAATACCCACTTTCAGCTGGTGATGCGAATACTGCTGCTACCTTGCATTCATCTATTTCTTCGTCTTATTCTTCAAGGACTCACGAGCACATAGATCAAGTGCTTGAGCCCGAGTACTTGGATGATGAATTGTGTAACTGTAAATATGTTATAAATGGTTTCTTTGATGAAGGAGACTTAGCTACCTGGACCCTGTTCTTCGGTACTGTGTACGTTTGTCTCACGAATCACAAGCTTTCAACTGCACTTACTGAAAGAGAGGGAAATATGGTAGCTCATTCTCAGGTGTGCAGTCATACAGTGGCAAGCACCATGTTTGTAGTTAGTTGCATTGATTATCTTCAAAGTCCTTTATAG 579 0.4577 MVMVSLTLGELHSVPHFPTTGTLGFAYCISRFRTQRQGQRLWLGTFNTAKEAARAYDGAAYSMRGPLAILNFPHEYPLSAGDANTAATLHSSISSSYSSRTHEHIDQVLEPEYLDDELCNCKYVINGFFDEGDLATWTLFFGTVYVCLTNHKLSTALTEREGNMVAHSQVCSHTVASTMFVVSCIDYLQSPL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1520 192 PANTHER DNA-BINDING DOMAIN 33 116 IPR044808 GO:0003700|GO:0009873
Dere11g1520 192 SMART rav1_2 28 79 IPR001471 GO:0003700|GO:0006355
Dere11g1520 192 Gene3D AP2/ERF domain 25 74 IPR036955 GO:0003700|GO:0006355
Dere11g1520 192 CDD AP2 30 74 IPR001471 GO:0003700|GO:0006355
Dere11g1520 192 SUPERFAMILY DNA-binding domain 30 75 IPR016177 GO:0003677
Dere11g1520 192 ProSiteProfiles AP2/ERF domain profile. 10 73 IPR001471 GO:0003700|GO:0006355
Dere11g1520 192 Pfam AP2 domain 35 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1520 Dere-ChrDere11 27956293 27961867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1520 34 118 AP2-EREBP Transcription Factor Family AT5G43410 52.941 2.36e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g1520 AP2 2.4e-06 CL0081