Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1519 ATGACCCCATATAATGTAATACTAATTGAAGTAGCTGAATTACTGCACTCTTTTGAGGGACCAAGATTTGCATGCTTGGGTCGAGGGATTAGAGTCCAGACCAGAACTATCGGGAATACACTAGTAATGCCTTCTTCATCATCATCATCATCTTCTTCTCATGTTCCTCAGAAAAAATATGATGTTTTCATCAGCTTTAGAGGTCCGGACATCAGATATGGTTTTCTTAGCCACTTGACAAAGAAATTATGTCAAACGCATATCGATGCCTACGTTGATGATAGACTTGAGAAAGGAGATGAAATAGCATCAACACTTTTCAATGCAATAGAAGGATCAGTGATTTCATTGGTCATATTTTCAAAAGATTATGCTTTCTCAAAGTGGTGCTTGGATGAGCTTGTGAAAATCATGGAATGCAAGGAAGTTAATGCCCAGATTGTAATACCAGTTTTCTACGATGTAGATCCATCAGATGTAAGACACCAAAAAGGTTCTTATGGAGATGCATTAGCGCAACATGAACAAAAGCTCGTGGTTAACATAGAGAAGCTACAAATTTGGAGGTCTACCTTGAAAACAGCTGCCAACTTATCTGGTTATCGTTATTCATCAAATTTTGAGAATGAATCTAAACTCCTTGATGAAATAGTCAAAGATATCTTGAAAAAATTGGAAGATAACGACCCAATTGAGCCAAATTGCTTTGTTGGATTTCATGAAAATTTTTCATGTGTTGAATCATTAATGGAAATTGAGTCACGAGAAGTTCGAATTCTTGGAATTTGGGGCATGGGAGGCATAGGCAAAACAACCCTAGCACATGCTATATTTGACAAATTTTTTTCCCAATTTGAAAGTTGTTGCTTCTTAGAAAATGTGAGAGAAGAGGAAAGAAAAATGGGTTTGAGTCATCTACGCCAAAAACTTCTTTCGGAACTACTAAACCAAGAAAGTGTCCAAATGAATGATGCAATGAATAAAGCAAGATCCATTAAGAGAAGGCTACATCGAAAAAAAGTTCTTATCGTCCTTGATGATGTGAACACCTCAAAGCAACTAAAAGATTTGGCTGGAGAACAACTCTACGTAGGACCGGGCGATGACAAGCACATTTACAAAATCGCTGGTGTCTACTATGTGGAGCATTCTCTAAATTCAGATCATGTTTTTCTATGGTATGAGCGATATCGATTGGAGAATGCTCAAAGAAGTTATGATGAGGGCATCACTTCTAAGTTGGCATGTGAATTCAGTATTATACCAGAACATAGGAGTTATGGAAGAAACAAAAGCACTACGAGAAATAGAGTCTCTCCTATAGCTTTACAGGTTCAGACTCTAACAAAAGCACTTGCTATCAATTTCTTTGATAAAGTTTACTCAACTACCTTAGCCCTTGTCCTGCAAGACCTTCTGCAGTTGTCTCACTTCTTCAGAGTTTTTCAATATCCTGTGTTCAAATTGAAGGTAAGTGTTCCACTCTCTCGAAAACTAGGACCTCTAATACTTTTTACCACATAA 1524 0.3727 MTPYNVILIEVAELLHSFEGPRFACLGRGIRVQTRTIGNTLVMPSSSSSSSSSHVPQKKYDVFISFRGPDIRYGFLSHLTKKLCQTHIDAYVDDRLEKGDEIASTLFNAIEGSVISLVIFSKDYAFSKWCLDELVKIMECKEVNAQIVIPVFYDVDPSDVRHQKGSYGDALAQHEQKLVVNIEKLQIWRSTLKTAANLSGYRYSSNFENESKLLDEIVKDILKKLEDNDPIEPNCFVGFHENFSCVESLMEIESREVRILGIWGMGGIGKTTLAHAIFDKFFSQFESCCFLENVREEERKMGLSHLRQKLLSELLNQESVQMNDAMNKARSIKRRLHRKKVLIVLDDVNTSKQLKDLAGEQLYVGPGDDKHIYKIAGVYYVEHSLNSDHVFLWYERYRLENAQRSYDEGITSKLACEFSIIPEHRSYGRNKSTTRNRVSPIALQVQTLTKALAINFFDKVYSTTLALVLQDLLQLSHFFRVFQYPVFKLKVSVPLSRKLGPLILFTT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1519 507 PRINTS Disease resistance protein signature 259 274 - -
Dere11g1519 507 PRINTS Disease resistance protein signature 335 349 - -
Dere11g1519 507 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 60 368 IPR044974 GO:0006952
Dere11g1519 507 SUPERFAMILY Toll/Interleukin receptor TIR domain 49 201 IPR035897 -
Dere11g1519 507 SMART till_3 59 198 IPR000157 GO:0007165
Dere11g1519 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 357 IPR027417 -
Dere11g1519 507 Gene3D - 222 365 IPR027417 -
Dere11g1519 507 Coils Coil 315 335 - -
Dere11g1519 507 Pfam TIR domain 59 233 IPR000157 GO:0007165
Dere11g1519 507 Gene3D - 57 221 IPR035897 -
Dere11g1519 507 Pfam NB-ARC domain 247 355 IPR002182 GO:0043531
Dere11g1519 507 ProSiteProfiles TIR domain profile. 58 225 IPR000157 GO:0007165
Dere11g1519 507 FunFam Disease resistance protein (TIR-NBS-LRR class) 56 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1519 Dere-ChrDere11 27877431 27883351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1519 58 367 WRKY Transcription Factor Family AT4G12020 32.476 8.24e-37 143