Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1514 ATGTACTATAGTACTAGTCCTTTAGGAGTGAAGAAAGAAGAGAAATTAAGGTTACTGGAGGCAGGCATGGGTCATCACTCTTGCTGCAACAAGCAGAAGGTGAAAAGAGGATTATGGTCACCTGAAGAAGACGAGAAACTCATCAAATACATCACCACTTATGGCTATGGCTGCTGGAGCTCTGTCCCTAAACTTGCAGGACTCCAGAGATGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGGAACTTCACTCCTCAAGAAGCAGCCCTTATTATCGAACTCCATAGCATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCACCTACCCGGCAGAACAGACAACGAGGTGAAGAACTTTTGGAACTCAAGCGTCAAGAAGAAGCTTCTTTCTCATGATGATCATCTTCTTGTCCCTTCTTTAGCCCCCAGTAATGGTACTTCTGTGGAAAGCTTCTTTCCTCTAACCCCAAACCCTAATAATAATATGACCCTGAACTCTCATCTTCATCCCCAAGACCCGCTGTACCTTCCCACTTCATCATCACTTCTTCAAGGTTTTGAATTTGGTCTTGAAGCTGAAGATCTCAAGATAGGCAATCTCCTCCATATGCAGAATCCCATGCAAGAAATCACACCAATATCTAATATTGATCTTCCATCTTCCTATGAAGATCCATGGTCCTTGGTAAATCAAGAAAATCATCAGATTACCAGAAGTGATCATGCCAATCTACTATCCCCACATTACATTGCTGATAAATTCGTGAACCCAAGTTCAACTTTGCAGCATTATGAGAGCCAGTTAGTGGATCCTTGTAATATTGAACCAAAAGTCTTTGAGAGCATTGAGGATTATAATGCTTGTGGTTTTGGCGTCCCCTATTCTTCATCATCTGCTTCACAAGAACACATTAACTCTCTTGTGGCAAGAATTATTCAGAGTCATCCATCATCTGGTTTTAATTACCCACAAGATCAGAGTCAAATAGGTGACGTGGCAGCCAATCACTTGGAGTTCATGGATGCCCTCATGTCATCAGTGCCATTACCATCGACATCTTCATCGTCAGTGTCACCAAACAGCCACATTGTCATAAATACCCCCATTAGCTGGGAGGGTTAA 1152 0.4236 MYYSTSPLGVKKEEKLRLLEAGMGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGYGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGNFTPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSVKKKLLSHDDHLLVPSLAPSNGTSVESFFPLTPNPNNNMTLNSHLHPQDPLYLPTSSSLLQGFEFGLEAEDLKIGNLLHMQNPMQEITPISNIDLPSSYEDPWSLVNQENHQITRSDHANLLSPHYIADKFVNPSSTLQHYESQLVDPCNIEPKVFESIEDYNACGFGVPYSSSSASQEHINSLVARIIQSHPSSGFNYPQDQSQIGDVAANHLEFMDALMSSVPLPSTSSSSVSPNSHIVINTPISWEG 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1514 383 SMART sant 88 136 IPR001005 -
Dere11g1514 383 SMART sant 35 85 IPR001005 -
Dere11g1514 383 PANTHER MYB DOMAIN PROTEIN 55 23 289 - -
Dere11g1514 383 SUPERFAMILY Homeodomain-like 33 130 IPR009057 -
Dere11g1514 383 Gene3D - 91 138 - -
Dere11g1514 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Dere11g1514 383 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Dere11g1514 383 FunFam MYB transcription factor 28 88 - -
Dere11g1514 383 Pfam Myb-like DNA-binding domain 89 131 IPR001005 -
Dere11g1514 383 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Dere11g1514 383 CDD SANT 91 131 IPR001005 -
Dere11g1514 383 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Dere11g1514 383 Gene3D - 33 89 - -
Dere11g1514 383 FunFam Myb transcription factor 91 138 - -
Dere11g1514 383 CDD SANT 39 83 IPR001005 -
Dere11g1514 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1514 Dere-ChrDere11 27796723 27798466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1514 23 140 MYB Transcription Factor Family AT3G13890 92.373 1.38e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g1514 Myb_DNA-binding 7.6e-15 CL0123