Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1503 ATGGAACCTCGAGTTGGGAACAAGTTCCGGCTCGGCCGGAAGATTGGTAGCGGATCTTTCGGAGAGATCTACCTTGGCACTAATATTCAGACAAATGAAGAGGTTGCAATTAAGCTTGAAAATGTGAAGACCAAGCACCCCCAACTGTTGTATGAATCGAAGTTGTATAAAATACTACAAGGAGGAACTGGAATTCCAAACTTAAAATGGTTTGGTGTTGAGGGAGACTATAATGTGCTTGTAATGGATTTATTGGGGCCTAGTCTTGAGGATTTATTCAATTTTTGTAGTCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCACTCTAAATCATTTTTACATCGCGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGGAGACGTGCAAATCAAGTGTATGTCATTGACTTTGGTCTTGCTAAGAAGTATCGAGACACTTCTACTCATCAGCATATTCCTTACAGAGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGAGATGACTTAGAGTCACTTGGATATGTTCTTATGTATTTTTTGAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCTGGTACAAAGAAGCAAAAGTATGAGAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTCTGTCGTGGCTATCCCTCAGAATTTGCTTCTTACTTCCATTACTGTCGGTCACTGCGGTTTGATGATAAACCAGATTATGCTTATCTGAAGAGACTTTTCCGTGACCTTTTTATTCGTGAAGGATTTCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTGCTGCCCCTTCTGCACGTGCTATTGTTCCTGGTGCTGGACCAAGTTCTGGCATGCCACCAGCTGTTGCAAATGCTGATAGACATTTAGGTGGAGAAGATGGTAGGCACACTGGTTGGTCTTCATCAGATCCTACTCGTAGGAGGAATTCTGGACCTATTACAAATGATGTACTACCGAGACAAAAAGCCCCTGTTGCAAATGACTTGACTGGATCTAAAGATGCTACGTTATCGAGTTCCAACCTCTTCCGGTCAAGTGGATCACAAAGGCGAGGTGCTGTCTCCAGCAGTCGTGATGCAGCTATTGGCAGTGAGACTGAACCCTCTCGCCCTCTTGCTGTGGATGCAAGTCCAGGAGCACTTCGTAAAATTTCTGGTGCTCAAAGAAGTTCACCTATTATATCATCAGAGCACAACCGTACTTCATCTGGAAGAAACACCACGAATGTAAAGAATTTGGAGTCTACTCTCAGAGGTATTGAGGGCCTGCATTTCAATGATGAAAGGGTGCAGTATTAG 1419 0.4221 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNLKWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIAAPSARAIVPGAGPSSGMPPAVANADRHLGGEDGRHTGWSSSDPTRRRNSGPITNDVLPRQKAPVANDLTGSKDATLSSSNLFRSSGSQRRGAVSSSRDAAIGSETEPSRPLAVDASPGALRKISGAQRSSPIISSEHNRTSSGRNTTNVKNLESTLRGIEGLHFNDERVQY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1503 472 FunFam Casein kinase I isoform delta-like 1 308 - -
Dere11g1503 472 MobiDBLite consensus disorder prediction 328 342 - -
Dere11g1503 472 CDD STKc_CK1_delta_epsilon 8 282 - -
Dere11g1503 472 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Dere11g1503 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dere11g1503 472 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1503 472 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Dere11g1503 472 FunFam Putative Casein kinase I 1 85 - -
Dere11g1503 472 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1503 472 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dere11g1503 472 MobiDBLite consensus disorder prediction 311 448 - -
Dere11g1503 472 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1503 472 MobiDBLite consensus disorder prediction 371 403 - -
Dere11g1503 472 PANTHER CASEIN KINASE-RELATED 9 383 - -
Dere11g1503 472 MobiDBLite consensus disorder prediction 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1503 Dere-ChrDere11 27639022 27646125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1503 7 223 EF-hand Containing Proteins AT2G17890 25.778 8.02e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dere11g1503 Pkinase 2.8e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1388 12 25536733 25541638 Dere11g1503 11 27639022 27646125 CCT