Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dere11g1500 | ATGTTGTGTCGTTACTCTTACTGCCAAGCTTTCAACGAACTACCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAATTTGATGCTCGTCAATATGATTCTAAGATGAGTGAATTGCTTTCCATTGATGGACAAGAATTCTTCACTTCATATGACGAAGTCTATGACACTTTTGATGCAATGGGGTTACAAGAAAATCTTTTAAGAGGCATCTATGCTTATGGTTTTGAGAAGCCTTCAGCAATCCAACAAAGGGGAATTGTTCCTTTCTGCAAAGGCCTTGATGTGATTCAACAGGCTCAGTCTGGGACTGGGAAAACAGCAACTTTTTGCTCTGGAATTTTGCAGCAACTTGATTATGGATTAGTTGAGTGCCAGGCCTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGCGATTATCTCAGTGTTAAAGTTCATGCATGTGTAGGTGGGACAAGTGTTCGCGAGGATCAACGCATTCTCCAAGCTGGCGTCCATGTTGTTGTTGGCACTCCTGGTCGTGTTTTTGACATGCTACGAAGGCAGTCTCTTCGCCCAGACTACATCAAGATGTTTGTCTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACTATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTTATGAATAAGCCTGTGAGAATCTTGGTGAAGCGCGATGAACTAACTCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGAGAAAGAAGAGTGGAAGCTGGAGACCTTATGTGATCTTTATGAGACGCTGGCTATCACCCAAAGTGTCATTTTCGTGAACACTAGGCGCAAGGTCGACTGGCTTACTGACAAGATGCGAAGCAATGATCATACAGTCTCGGCTACCCACGGTGACATGGACCAAAACACTCGTGATATCATCATGCGCGAATTCCGGTCTGGCTCCTCTCGAGTTCTCATCACCACTGACCTACTGGCTCGTGGTATAGATGTGCAGCAAGTCTCTTTGGTCATAAACTATGATCTCCCAACCCAACCTGAAAATTATCTTCACCGTATTGGGAGAAGTGGACGATTTGGAAGAAAGGGTGTTGCTATAAACTTTGTGACTCTAGATGATTCGAGAATGCTGTCTGATATTCAGAAATTCTATAATGTGACAATAGAGGAGCTGCCATCAAATGTTGCTGATCTGCTCTGA | 1290 | 0.4419 | MLCRYSYCQAFNELPVMAGLAPEGTQFDARQYDSKMSELLSIDGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLSVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTIEELPSNVADLL | 429 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dere11g1500 | 429 | FunFam | Eukaryotic initiation factor 4A-II | 44 | 263 | - | - | |
Dere11g1500 | 429 | Pfam | DEAD/DEAH box helicase | 81 | 242 | IPR011545 | GO:0003676|GO:0005524 | |
Dere11g1500 | 429 | SMART | ultradead3 | 75 | 272 | IPR014001 | - | |
Dere11g1500 | 429 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 203 | 211 | IPR000629 | - | |
Dere11g1500 | 429 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 54 | 413 | - | - | |
Dere11g1500 | 429 | FunFam | Eukaryotic initiation factor 4A-III | 264 | 429 | - | - | |
Dere11g1500 | 429 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 87 | 257 | IPR014001 | - | |
Dere11g1500 | 429 | CDD | DEADc_EIF4A | 60 | 258 | - | - | |
Dere11g1500 | 429 | Gene3D | - | 265 | 429 | IPR027417 | - | |
Dere11g1500 | 429 | Gene3D | - | 46 | 264 | IPR027417 | - | |
Dere11g1500 | 429 | SMART | helicmild6 | 309 | 390 | IPR001650 | - | |
Dere11g1500 | 429 | CDD | SF2_C_DEAD | 269 | 399 | - | - | |
Dere11g1500 | 429 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 268 | 429 | IPR001650 | - | |
Dere11g1500 | 429 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 125 | 410 | IPR027417 | - | |
Dere11g1500 | 429 | Pfam | Helicase conserved C-terminal domain | 282 | 390 | IPR001650 | - | |
Dere11g1500 | 429 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 56 | 84 | IPR014014 | GO:0003724 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dere11g1500 | Dere-ChrDere11 | 27627822 | 27633857 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dere11g1500 | 17 | 429 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 88.164 | 0.0 | 763 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Dere12g1384 | 12 | 25517109 | 25520355 | Dere11g1500 | 11 | 27627822 | 27633857 | CCT | |
Dere11g1500 | 11 | 27627822 | 27633857 | Dere11g1500 | 11 | 27627822 | 27633857 | ECH |