Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1500 ATGTTGTGTCGTTACTCTTACTGCCAAGCTTTCAACGAACTACCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAATTTGATGCTCGTCAATATGATTCTAAGATGAGTGAATTGCTTTCCATTGATGGACAAGAATTCTTCACTTCATATGACGAAGTCTATGACACTTTTGATGCAATGGGGTTACAAGAAAATCTTTTAAGAGGCATCTATGCTTATGGTTTTGAGAAGCCTTCAGCAATCCAACAAAGGGGAATTGTTCCTTTCTGCAAAGGCCTTGATGTGATTCAACAGGCTCAGTCTGGGACTGGGAAAACAGCAACTTTTTGCTCTGGAATTTTGCAGCAACTTGATTATGGATTAGTTGAGTGCCAGGCCTTGGTTTTGGCACCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGCGATTATCTCAGTGTTAAAGTTCATGCATGTGTAGGTGGGACAAGTGTTCGCGAGGATCAACGCATTCTCCAAGCTGGCGTCCATGTTGTTGTTGGCACTCCTGGTCGTGTTTTTGACATGCTACGAAGGCAGTCTCTTCGCCCAGACTACATCAAGATGTTTGTCTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATATTCCAGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCTACTATGCCACCAGAAGCCCTTGAGATTACAAGGAAGTTTATGAATAAGCCTGTGAGAATCTTGGTGAAGCGCGATGAACTAACTCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGAGAAAGAAGAGTGGAAGCTGGAGACCTTATGTGATCTTTATGAGACGCTGGCTATCACCCAAAGTGTCATTTTCGTGAACACTAGGCGCAAGGTCGACTGGCTTACTGACAAGATGCGAAGCAATGATCATACAGTCTCGGCTACCCACGGTGACATGGACCAAAACACTCGTGATATCATCATGCGCGAATTCCGGTCTGGCTCCTCTCGAGTTCTCATCACCACTGACCTACTGGCTCGTGGTATAGATGTGCAGCAAGTCTCTTTGGTCATAAACTATGATCTCCCAACCCAACCTGAAAATTATCTTCACCGTATTGGGAGAAGTGGACGATTTGGAAGAAAGGGTGTTGCTATAAACTTTGTGACTCTAGATGATTCGAGAATGCTGTCTGATATTCAGAAATTCTATAATGTGACAATAGAGGAGCTGCCATCAAATGTTGCTGATCTGCTCTGA 1290 0.4419 MLCRYSYCQAFNELPVMAGLAPEGTQFDARQYDSKMSELLSIDGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLSVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTIEELPSNVADLL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1500 429 FunFam Eukaryotic initiation factor 4A-II 44 263 - -
Dere11g1500 429 Pfam DEAD/DEAH box helicase 81 242 IPR011545 GO:0003676|GO:0005524
Dere11g1500 429 SMART ultradead3 75 272 IPR014001 -
Dere11g1500 429 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Dere11g1500 429 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 54 413 - -
Dere11g1500 429 FunFam Eukaryotic initiation factor 4A-III 264 429 - -
Dere11g1500 429 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 257 IPR014001 -
Dere11g1500 429 CDD DEADc_EIF4A 60 258 - -
Dere11g1500 429 Gene3D - 265 429 IPR027417 -
Dere11g1500 429 Gene3D - 46 264 IPR027417 -
Dere11g1500 429 SMART helicmild6 309 390 IPR001650 -
Dere11g1500 429 CDD SF2_C_DEAD 269 399 - -
Dere11g1500 429 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 268 429 IPR001650 -
Dere11g1500 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 410 IPR027417 -
Dere11g1500 429 Pfam Helicase conserved C-terminal domain 282 390 IPR001650 -
Dere11g1500 429 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 56 84 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1500 Dere-ChrDere11 27627822 27633857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1500 17 429 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1384 12 25517109 25520355 Dere11g1500 11 27627822 27633857 CCT
Dere11g1500 11 27627822 27633857 Dere11g1500 11 27627822 27633857 ECH