Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1494 ATGGCTGCAGGTGAAGGAGAGACGTTCAAGATCAAAGGCACTTTGATCATCGTCAACCCAAACCTCAGTGCAGTCGATGATACTGACTCTGACTCTGAGGGTCTCTTACAGTTCATCACTCTTCAGTTGATCAGTGCTTCAAAGCCTGCAGAAAATGGGTTCATGAAACTTGAAGTTTCTGCTTCACTTGAAGGGTCTAATACCTCATCACAGATCTTGCCTGCAACTCAGTCTGAGTACATTGTTTATTTTGATTGGAGCGATGAGATGGGAATCCCTGGAGCCTTTATTATAAGAAACCTTCACTCCACTGCTTACTTCTACCTTGTGAGTCTCACCATTGAAGACATTCCGAGTCATCCTGCCCCCATCAATTTTGTTTGCAGATCATGGGTTTACCCAGATACTAAATACAAAAGCCCTCGTATTTTCTTTGTCAACAAGTCATATCTCCCAAATAAGACACCAGACGGACTGCGGAAATACAGAGAAGAAGAGTTGAAAACTTTAAGAGGAGATGGAACAGGTGAGCGCCAGGAATGGGAAAGAATCTATGATTATGCTTTCTACAATGATTTGGGCAAACCTGATGAGAATGCAGAACTAGCTCGTCCAGTTCTTGGAGGGTCCAGTGAATATCCCTATCCTCGTAGGGGAAGAACTGGCAGACCATCAACCGAAGCAGATCCTAATTGTGAGAGTAGACTTTCTGATGATCAAGCATTTTCAGTCTATGTTCCAAGAGATGAGCAATTTGGTGACCAGAAGCTGTTTGAATTTGTGTCTTATTTTCCGAAATCTATGATTAACAGTATGAAAAGTTATATGCAAGCGAAATTATTGGAGGACAATGCAGAAGAGTTTGTGAGCTTTGAAGATTTACGTCAAGTCCTTTTCAAAGATGGCTTTAAATTTTCTGTGCCTCAAGCCTTACTTGATGCTATTGCCGAAAGGCTAGGCATAGAGGTCCCATCTGATGGCGAGCTGACAGTACTATTGCCAATTCCTAGTGTCATTCAAGATAATCTGGATGGGTGGATGACTGATGAGGAATTTGCAAGAGAGATGCTTGCGGGTGTGAATCCTGGTTTAATCCGCCTTCTCCAAGAGTTTCCCCGTAAAAGCCAGCTAGATACTGAGGTCTACGGTGATCAAACCTGTAAGATAACCAAAGAACAGTTGGAGAAAAGTCTATCTGGACTCACAGTAGATGAGGCACTCAATAGCAAGAGATTATTCATACTAGATCACCATGACTCGTTCATGCCATATCTGAGGCTGATTAATGAAACTTCGAGAAAGGCTTATGCCAGTAGGACAATTCTTTTCTTGAAAGATGATGGGACTTTGAAGCCATTGGCTATTGAATTAAGCTTGCCTCATCCTCTCGGAGATGAATATGGTGCTGTGAGTAAAGTCTACTTGCCTGCAAATGAAGGTGTTGAGGCTACCATTTGGCAATTTGCTAAAGCTTATGTAATCGTAAATGACTCAGGCTACCATCAGCTAATTAGTCACTGGCTAAATACTCATGCTGCGATTGAGCCATTTGTCATAGCAACAAACAGACAACTTAGTGTGCTTCACCCTATTCATAAACTTTTACATCCTCATTTTCATGATACAATGTTCATAAATGCACTTGCTCGACAAAACTTAATCTGTGCACAGGGCATTGTAGAGACCTCATTCTTGCCTGGAAAATATTCTATGCTGATGTCATCTGCAGTTTACAAGGATTGGAATTTCCTTGAACAAGCATTGCCTACTGATCTTATCAAGAGAGGAATGGCAGTTAATGATGAAACTTCCCCTCACGGGCTTCGCCTTGTGATAGAGGACTACCCTTTTGCTGTTGATGGACTAGACATTTGGGATGCTATTAAGACATGGGTTCATGAATATGTCTTCTCCTACTATGAGACAGATGACTATATTAAACAAGACATTGAGCTACAATCTTGGTGGAAAGAACTAGTGGAAGTGGGTCATGCTGACTTAAAGATAAGGACTGGTGGCCTAAGATGCAAACATGTGAAGAGCTTATTGAATGTTGCACTATTATCATTTGGGTTTCTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAGTTTCCTTATGGAGGTTACATCCTAA 2136 0.4157 MAAGEGETFKIKGTLIIVNPNLSAVDDTDSDSEGLLQFITLQLISASKPAENGFMKLEVSASLEGSNTSSQILPATQSEYIVYFDWSDEMGIPGAFIIRNLHSTAYFYLVSLTIEDIPSHPAPINFVCRSWVYPDTKYKSPRIFFVNKSYLPNKTPDGLRKYREEELKTLRGDGTGERQEWERIYDYAFYNDLGKPDENAELARPVLGGSSEYPYPRRGRTGRPSTEADPNCESRLSDDQAFSVYVPRDEQFGDQKLFEFVSYFPKSMINSMKSYMQAKLLEDNAEEFVSFEDLRQVLFKDGFKFSVPQALLDAIAERLGIEVPSDGELTVLLPIPSVIQDNLDGWMTDEEFAREMLAGVNPGLIRLLQEFPRKSQLDTEVYGDQTCKITKEQLEKSLSGLTVDEALNSKRLFILDHHDSFMPYLRLINETSRKAYASRTILFLKDDGTLKPLAIELSLPHPLGDEYGAVSKVYLPANEGVEATIWQFAKAYVIVNDSGYHQLISHWLNTHAAIEPFVIATNRQLSVLHPIHKLLHPHFHDTMFINALARQNLICAQGIVETSFLPGKYSMLMSSAVYKDWNFLEQALPTDLIKRGMAVNDETSPHGLRLVIEDYPFAVDGLDIWDAIKTWVHEYVFSYYETDDYIKQDIELQSWWKELVEVGHADLKIRTGGLRCKHVKSLLNVALLSFGFLQLSMQLLILDSFLMEVTS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1494 711 Gene3D - 169 273 - -
Dere11g1494 711 PRINTS Plant lipoxygenase signature 331 347 IPR001246 GO:0016491
Dere11g1494 711 PRINTS Plant lipoxygenase signature 116 134 IPR001246 GO:0016491
Dere11g1494 711 PRINTS Plant lipoxygenase signature 142 163 IPR001246 GO:0016491
Dere11g1494 711 PRINTS Plant lipoxygenase signature 370 389 IPR001246 GO:0016491
Dere11g1494 711 PRINTS Plant lipoxygenase signature 181 197 IPR001246 GO:0016491
Dere11g1494 711 PRINTS Plant lipoxygenase signature 214 233 IPR001246 GO:0016491
Dere11g1494 711 PRINTS Plant lipoxygenase signature 436 460 IPR001246 GO:0016491
Dere11g1494 711 Gene3D - 363 497 - -
Dere11g1494 711 FunFam Lipoxygenase 151 255 - -
Dere11g1494 711 SMART LH2_4 9 147 IPR001024 GO:0005515
Dere11g1494 711 PANTHER LIPOXYGENASE 37 668 IPR000907 GO:0016702|GO:0034440|GO:0046872
Dere11g1494 711 Pfam PLAT/LH2 domain 63 145 IPR001024 GO:0005515
Dere11g1494 711 ProSitePatterns Lipoxygenases iron-binding region signature 1. 501 515 IPR020833 GO:0016702|GO:0046872
Dere11g1494 711 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Dere11g1494 711 PRINTS Lipoxygenase signature 483 500 IPR013819 GO:0016702|GO:0046872
Dere11g1494 711 PRINTS Lipoxygenase signature 521 541 IPR013819 GO:0016702|GO:0046872
Dere11g1494 711 FunFam Lipoxygenase 345 478 - -
Dere11g1494 711 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 150 IPR036392 GO:0005515
Dere11g1494 711 ProSiteProfiles PLAT domain profile. 18 146 IPR001024 GO:0005515
Dere11g1494 711 Gene3D - 498 688 - -
Dere11g1494 711 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 149 711 IPR013819 GO:0016702|GO:0046872
Dere11g1494 711 ProSitePatterns Lipoxygenases iron-binding region signature 2. 528 538 IPR020834 GO:0016702|GO:0046872
Dere11g1494 711 Gene3D - 274 362 IPR027433 -
Dere11g1494 711 SUPERFAMILY Lipoxigenase 151 684 IPR036226 -
Dere11g1494 711 Pfam Lipoxygenase 158 684 IPR013819 GO:0016702|GO:0046872
Dere11g1494 711 Gene3D PLAT/LH2 domain 12 168 - -
Dere11g1494 711 MobiDBLite consensus disorder prediction 206 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1494 Dere-ChrDere11 27570727 27575601 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1494 2 668 Acyl Lipid Metabolism Gene Families AT1G55020 53.382 0.0 710