Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1487 ATGTTCAACGTAAAGGTGCCAGACTTGTTTGGGCAGAACGCGGGGAAGATCAAAGGGACAGTTGTGTTGATGACCAAGAAGGTTCTGGACTTCAATAATTTGAACCTCAATGCAGGCATCAACGTGGGTCTTGATCTTGGTGGCTCGGTCTTGGATGGTCTTCGTCAATTCCTAGGTGGAGCTGTCTCTCTTCAACTGATTAGTGCTACCCAAGCTGATACTGGAAATGGGTTGGGAAAACTTGGAAAGCCTGCATCATTGGAAGGGTTCATTACCACGTTGCCAACTTTGTTGGAAGGCCAAAATGCATTCAGTGTTCATTTTGATTACAGTGAAGAGATAGGAGTCCCAGGAGCTTTTGTGATAAGGAACAATCTCCTCACTGAGTTCTACCTTGTGAGCTTGACTCTTGATGACATTCCTAACCATGGCTCCATCCACTTCGTCTGCAACTCATGGATTTACCCAGACAGTAAATACAAAAGCGATCGCATCTTCTTCGCCAACAAGGCGTATCTCCCGAGTCAAACACCGGCTGCATTGAGCAAATACAGAGAACAAGAGCTCATTACATTAAGAGGAGATGGATTTTCAGAGTGCAAGGAGTGGGATAGAGTCTACGATTATGCTACTTATAATGATTTGGGTGATCCTGATTCGAGTGAAAAGCTAGCTCGTCCAACTCTTGGAGGCTCTAGCGACTATCCCTACCCTCGAAGAGGAAGAACTAGCAGGGCACCTAACAAATCAGATCCAAGCACTGAGAGCAGACTTCTTTTTGGAGTTCAAACCCTCGATATTTATGTTCCCAGAGATGAACGATTCGGTCACGTGAAATTATCAGACTTTTTGGCATATTTGCTGAAATCTGTGGCTCAAGATCTGAGACCATTATTGGAATCCGCACTTAAATTGTCCAATGAGTTTGATAGTTTTGATGATGTTCGTGAACTCTATGATGGTGGATTTAAGCTGCCACTCGACATATTCAAGGACTTGACTCAAAAATTGCCTTTACCATTGCTCCAAGAACTTTTCCGAACTGATGGTGAACAGTTTCTCAGATTCCCAACTCCTACAGTCATTAAAGAGAATATTTCCGGATGGATGACTGATGAAGAATTTGCAAGAGAGGTGCTTGCTGGTGTGAATCCTGGCTTAATTCGGTGTCTTCAAGAGTTCCCACCAAAAAGCAACCTAGATGCTGATGTCTATGGTGATCAAACCAGTAAGATAACCAGAGAACAGTTAGAGACAAACCTTACTGGACTCACAGTGGACGAGGCACTCAGTGGCAAGAGATTGTTCATATTAGATCACCATGACGCATTCATGCCATATCTGAGACGAATAAACGATGGAACTGACCATAAGGCCTATGCCACAAGGACAATCTTTTTCTTGAAAGACGATGGAACTTTGAAGCCATTGGCCATTGAATTAAGTTTACCCCATTCTGATGGGGACCAATATGGTGCTGTTAGTAAAGTCATTTTGCCCGCTGATCAAGGTGTTGAGGCTACCATTTGGCTTTTGGCTAAGGCTTATGTAATCGTAAATGACTCAGGCTACCATCAACTTGTTAGCCACTGGCTACATACTCATGCAGTCATTGAGCCATTCGTTATAGCAACTAACAGGCAGTTGAGTGTGCTTCATCCCATCCATAAACTTCTGCATCCTCATTTTCGTGACACTATGAATATAAATGCACTAGCTCGACAAGCCTTGATCAACGCAAACGGCATTATAGAGCTGTCATTCTTGCCTGGAAAGTACTCTATTGAGATGTCTTCTAAGGATTACAAGAATTGGGTTTTCCCTGATCAAGCCCTCCCTGCTGATTTGGTCAAAAGAGGGATGGCAGTAGAGGATCCAGATAGCCCTCATGGGCTTCGTCTCGTGGTAGAGGACTACCCTTTTGCTGTTGATGGACTAGAGATTTGGGGAGCTATTAAGACATGGGTACATGACTATGTTTCTTGCTATTATGAGGATGATGACACTGTTAAACAAGACTCTGAACTACAAGCTTGGTGGAAAGAACTTGTAGAAGTGGGTCATGGCGACCATAAAGATAAGTCTTGGTGGCCTAAGATGCAAACACGTAAAGAACTTATTGAATCATGCACTATTGTCATATGGACTGCTTCAGCTCTCCATGCAGCTGTCAATTTTGGACAGTACCCTTATGGAGGTTATATTCTAAACCGTCCAACTCTCAGCAGAAGATTGCTTCCTGAAGAAGGAACTGCAGAACATGAAGAGCTTAAGAAGAACCCCGAAAAAGCTTTCTTGAAAACAATTACACCAAAGTGGCAGACCCTTGTTGACCTTTCAGTTATAGAAATATTATCAAGGCATGCTTCTGATGAGGTCTATCTTGGGACAAGAGACAATCCAAACTGGACTTCTGATGTGAAGCCATTGGAGGCTTTTAAGAAGTTTGGAAAGAAGCTGTCTGAGATTGAAGAAAAGTTGATCAAGAGGAACACGGATGAGACACTGAGAAATAGGATTGGGCCTGTTAACATGCCTTACACTCTGCTTTTTCCTACAAGTGAAGAAGGGCTTACAGGCAGAGGTATTCCAAACAGTATCTCCATTTGA 2610 0.4318 MFNVKVPDLFGQNAGKIKGTVVLMTKKVLDFNNLNLNAGINVGLDLGGSVLDGLRQFLGGAVSLQLISATQADTGNGLGKLGKPASLEGFITTLPTLLEGQNAFSVHFDYSEEIGVPGAFVIRNNLLTEFYLVSLTLDDIPNHGSIHFVCNSWIYPDSKYKSDRIFFANKAYLPSQTPAALSKYREQELITLRGDGFSECKEWDRVYDYATYNDLGDPDSSEKLARPTLGGSSDYPYPRRGRTSRAPNKSDPSTESRLLFGVQTLDIYVPRDERFGHVKLSDFLAYLLKSVAQDLRPLLESALKLSNEFDSFDDVRELYDGGFKLPLDIFKDLTQKLPLPLLQELFRTDGEQFLRFPTPTVIKENISGWMTDEEFAREVLAGVNPGLIRCLQEFPPKSNLDADVYGDQTSKITREQLETNLTGLTVDEALSGKRLFILDHHDAFMPYLRRINDGTDHKAYATRTIFFLKDDGTLKPLAIELSLPHSDGDQYGAVSKVILPADQGVEATIWLLAKAYVIVNDSGYHQLVSHWLHTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNINALARQALINANGIIELSFLPGKYSIEMSSKDYKNWVFPDQALPADLVKRGMAVEDPDSPHGLRLVVEDYPFAVDGLEIWGAIKTWVHDYVSCYYEDDDTVKQDSELQAWWKELVEVGHGDHKDKSWWPKMQTRKELIESCTIVIWTASALHAAVNFGQYPYGGYILNRPTLSRRLLPEEGTAEHEELKKNPEKAFLKTITPKWQTLVDLSVIEILSRHASDEVYLGTRDNPNWTSDVKPLEAFKKFGKKLSEIEEKLIKRNTDETLRNRIGPVNMPYTLLFPTSEEGLTGRGIPNSISI 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1487 869 ProSitePatterns Lipoxygenases iron-binding region signature 1. 525 539 IPR020833 GO:0016702|GO:0046872
Dere11g1487 869 FunFam Lipoxygenase 504 868 - -
Dere11g1487 869 Pfam PLAT/LH2 domain 69 167 IPR001024 GO:0005515
Dere11g1487 869 ProSiteProfiles PLAT domain profile. 38 168 IPR001024 GO:0005515
Dere11g1487 869 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 16 172 IPR036392 GO:0005515
Dere11g1487 869 CDD PLAT_LH2 16 169 IPR042057 -
Dere11g1487 869 PRINTS Plant lipoxygenase signature 164 185 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 203 219 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 354 370 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 138 156 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 782 796 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 460 484 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 236 255 IPR001246 GO:0016491
Dere11g1487 869 PRINTS Plant lipoxygenase signature 393 412 IPR001246 GO:0016491
Dere11g1487 869 SUPERFAMILY Lipoxigenase 173 869 IPR036226 -
Dere11g1487 869 PRINTS Lipoxygenase signature 545 565 IPR013819 GO:0016702|GO:0046872
Dere11g1487 869 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Dere11g1487 869 PRINTS Lipoxygenase signature 525 542 IPR013819 GO:0016702|GO:0046872
Dere11g1487 869 Gene3D - 279 367 IPR027433 -
Dere11g1487 869 Gene3D PLAT/LH2 domain 9 172 - -
Dere11g1487 869 FunFam Lipoxygenase 173 278 - -
Dere11g1487 869 SMART LH2_4 15 169 IPR001024 GO:0005515
Dere11g1487 869 PANTHER LIPOXYGENASE 16 869 IPR000907 GO:0016702|GO:0034440|GO:0046872
Dere11g1487 869 MobiDBLite consensus disorder prediction 218 255 - -
Dere11g1487 869 Gene3D - 173 278 - -
Dere11g1487 869 FunFam Lipoxygenase 368 502 - -
Dere11g1487 869 Pfam Lipoxygenase 181 852 IPR013819 GO:0016702|GO:0046872
Dere11g1487 869 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 171 869 IPR013819 GO:0016702|GO:0046872
Dere11g1487 869 Gene3D - 368 502 - -
Dere11g1487 869 Gene3D - 503 868 - -
Dere11g1487 869 ProSitePatterns Lipoxygenases iron-binding region signature 2. 552 562 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1487 Dere-ChrDere11 27454991 27459709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1487 16 869 Acyl Lipid Metabolism Gene Families AT1G55020 62.005 0.0 1102