Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1465 ATGACTGCTTTGGTTCCCTTGGGAAGTCATCCTTGGCTCATTTATGTTGATGTCTTGTTGTTACTAGCGTTTGTGGAAAGATTTGTAGAGGAGGAGGCAATGGACCCGCGAGCACAGTATAATCCTCGCACTGTTGAAGAGGTTTTTAGGGATTTCAAGGGCAGAAGAGCTGGGCTGATTAAAGCCCTTACAACGGATGTTGAAGATTTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGATTCCCTAGTGAGCAGTGGGAAGTAAATCTACCTGCTGAAGAAGTTCCTCCGGAGCTTCCTGAGCCTGTTCTGGGCATTAATTTTGCCAGGGATGGCATGCAAGAAAGGGACTGGTTATCTTTAGTTGCTGTCCATAGTGACGCATGGTTACTTTCCATTTCCTTCTATTTTGGAGCGAGATTTAGTTTTGATAAAGCTGACAGGAAACGGCTTTTCAATATGATCAATGAACTACCAACAATTTTTGAAGTTGTCACTGGTGCGGCAAAGAAAGAAGTTAAGGAGAAGTCTTCCGTTTCAAATCACAGTGGCAGCAAATCTAAGTCCAGCTCTAAAGTGCGAGCTTCAGAAAGTCAGGGCAGACAATCAAGGGCATTGCAATCCAAAGATGAGGACGAAGTACAGGATGAGCAAGATGAAGAAGATGAACATGGGGATACCTTGTGTGGGGCATGTGGTGAGAATTCTGGTACCGATGAGTTCTGGATTTGCTGTGACGTTTGCGAGAAGTGGTTCCATGGCAAATGTGTAAAGATTACCCCCGCTAGGGCAGAGCATATTAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGGCCCTGA 864 0.4491 MTALVPLGSHPWLIYVDVLLLLAFVERFVEEEAMDPRAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQERDWLSLVAVHSDAWLLSISFYFGARFSFDKADRKRLFNMINELPTIFEVVTGAAKKEVKEKSSVSNHSGSKSKSSSKVRASESQGRQSRALQSKDEDEVQDEQDEEDEHGDTLCGACGENSGTDEFWICCDVCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1465 287 CDD PHD_AL_plant 233 283 IPR044104 -
Dere11g1465 287 MobiDBLite consensus disorder prediction 178 230 - -
Dere11g1465 287 SUPERFAMILY FYVE/PHD zinc finger 222 284 IPR011011 -
Dere11g1465 287 SMART PHD_3 233 281 IPR001965 -
Dere11g1465 287 Pfam Alfin 44 172 IPR021998 GO:0006355|GO:0042393
Dere11g1465 287 ProSitePatterns Zinc finger PHD-type signature. 234 280 IPR019786 -
Dere11g1465 287 PANTHER CPG BINDING PROTEIN 41 286 IPR045104 GO:0006355|GO:0042393
Dere11g1465 287 Pfam PHD-finger 234 283 IPR019787 -
Dere11g1465 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 282 IPR013083 -
Dere11g1465 287 FunFam PHD finger alfin-like protein 226 282 - -
Dere11g1465 287 MobiDBLite consensus disorder prediction 187 208 - -
Dere11g1465 287 ProSiteProfiles Zinc finger PHD-type profile. 231 283 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1465 Dere-ChrDere11 26991218 26998089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1465 38 286 Alfin-like Transcription Factor Family AT3G42790 75.502 2.07e-127 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dere11g1465 Alfin 1.3e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1373 12 25436055 25442111 Dere11g1465 11 26991218 26998089 CCT
Dere11g1465 11 26991218 26998089 Dere12g1373 12 25436055 25442111 ECH
Dere11g1465 11 26991218 26998089 Dere11g1465 11 26991218 26998089 ECH