Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1464 ATGGAGTGCACATGCAAGAAAGACTCTGGCCTATGTTCTTCCCATTCAACTTCCCCTAATTTTCTTGGATGCTCATCATGGGGAGCTTTTTCTGAATTTGATGTTCAACAATCATCTGTGTCTGAAAGTTTGAGCTTGAAAATGGGAGTTCTACCTCAACAATGTCTTACTAAGCCGTTAAGTCCTCAGTTTCAAGACCATCAGTCATCTTCAACCCAATCAACTGATCAATCTTATCCTGAAGTGGGTTCAGCAAAGTCAGGTCAATTTTCTATGCAGTATAGCAATTCTACTGCTCATTCAACATACAGCAGAACAGAGGGAAAGCCTGTGGGAGGTGTCCTCAGGTCATCTGTGGGGAGACAAGGACAAGACTTTGCCTTTCCTACTCAACAATTAGATTATGACCAATCAATTATTCATCATGCTCAACTAATAGGAATGGCTTCTCTTAGGATTCCACTTCCACTTGAACTCACAGAAGAACCCATATTTGTGAATGCAAAGCAGTATCATGCTATTCTGAGGCGAAGGCAATACCGTGCGAAACTCGAAGCTCATAACAAACTCAACAAACCTCGGAAACCATATCTTCACGAGTCTCGGCATCAACATGCATTAAAGAGGGCTCGAGGTTCAGGTGGACGCTTTCTCAACACCAAAAAGCTCCAAGAATCAAGGGTCTCTTCAGCAAGCCAATGCCTAGATATGTCAAGCTCTGCACGGTTTAATCATCGAAATGTTAACACGCCGGAATCTGAAGTTCTTCGGGTGGGAAATTGCAGAGATGGTGCTTCCACCACCACCTGCTCTGATGTCACAAGTGTGTCTAACAGTGATGACTTCTTCCAACAGCAACAAGAGTCAGATTTCAGGCTCTGTGGAGGATATCCTTCTCACATTGGAAGCAATATGCAAGGTTACTCAGATGATATGTGTTGTCAGGAGAATCAGCACCGTCTATCTGTCTTCATGTGA 978 0.4346 MECTCKKDSGLCSSHSTSPNFLGCSSWGAFSEFDVQQSSVSESLSLKMGVLPQQCLTKPLSPQFQDHQSSSTQSTDQSYPEVGSAKSGQFSMQYSNSTAHSTYSRTEGKPVGGVLRSSVGRQGQDFAFPTQQLDYDQSIIHHAQLIGMASLRIPLPLELTEEPIFVNAKQYHAILRRRQYRAKLEAHNKLNKPRKPYLHESRHQHALKRARGSGGRFLNTKKLQESRVSSASQCLDMSSSARFNHRNVNTPESEVLRVGNCRDGASTTTCSDVTSVSNSDDFFQQQQESDFRLCGGYPSHIGSNMQGYSDDMCCQENQHRLSVFM 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1464 325 MobiDBLite consensus disorder prediction 61 91 - -
Dere11g1464 325 Gene3D - 160 221 - -
Dere11g1464 325 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Dere11g1464 325 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Dere11g1464 325 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Dere11g1464 325 ProSitePatterns NF-YA/HAP2 subunit signature. 165 185 IPR018362 GO:0003677|GO:0016602
Dere11g1464 325 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 217 IPR001289 GO:0003700|GO:0006355
Dere11g1464 325 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 56 286 IPR001289 GO:0003700|GO:0006355
Dere11g1464 325 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1464 Dere-ChrDere11 26988122 26991173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1464 14 325 CCAAT-HAP2 Transcription Factor Family AT1G17590 39.339 3.73e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere11g1464 CBFB_NFYA 1.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1371 12 25408288 25415372 Dere11g1464 11 26988122 26991173 CCT
Dere11g1464 11 26988122 26991173 Dere11g1464 11 26988122 26991173 ECH