Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1449 ATGGATAACTTCATGCAACTCCTTAAATACCCCTATCAATATGGTTTCCCTGACCAAACCGCAGAGAGGAGGCTCAGTTTTCTTCAGACGTCACAGAAGCTCACCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTAGCCGATGGAGTTTTCTTTGCGGAGCTGAATGAGGTCTTGACCAGAGAGCTTGCAGAGGATGGGTATTCTGGTGTTGAAGTTAGGGTTACGCCCATGCGGACTGAGATCATCATTAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGAATTAGGGAACTGACTTCTATTGTTCAGAAGCGTTTTAAGTTCCCTGAGAACAGCGTTGAGCTTTATGCTGAGAAGGTCAACAACAGGGGGCTCTGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTGCTGTCCGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTTATGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGTAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAATTCAAGGATGGGTACATGATATCATCCGGTCAGCCTGTCAAGGAATATATTGACTCTGCTGTGAGGCATGTGCTTCTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCGACTAAACCCATTCCGGATCTTGTCACTATCCATCCGCCAAAGGAGGAAGAGGATTACACCATCAGGCCCTTGCAACAGCCCGCTGTCCCCACCAACATAGAGATTGCTGCAGTTTAG 825 0.4812 MDNFMQLLKYPYQYGFPDQTAERRLSFLQTSQKLTNMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDLVTIHPPKEEEDYTIRPLQQPAVPTNIEIAAV 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1449 274 FunFam 40S ribosomal protein S3 129 264 - -
Dere11g1449 274 CDD KH-II_40S_S3 41 131 - -
Dere11g1449 274 FunFam 40S ribosomal protein S3 37 128 - -
Dere11g1449 274 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 42 234 - -
Dere11g1449 274 ProSiteProfiles Type-2 KH domain profile. 57 128 IPR004044 GO:0003723
Dere11g1449 274 Gene3D - 34 127 IPR015946 -
Dere11g1449 274 NCBIfam 30S ribosomal protein S3 44 227 IPR005703 GO:0003735|GO:0006412|GO:0015935
Dere11g1449 274 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 46 135 IPR009019 GO:0003723
Dere11g1449 274 SUPERFAMILY Ribosomal protein S3 C-terminal domain 129 227 IPR036419 -
Dere11g1449 274 Pfam KH domain 56 129 IPR004044 GO:0003723
Dere11g1449 274 Gene3D - 129 255 IPR036419 -
Dere11g1449 274 Pfam Ribosomal protein S3, C-terminal domain 142 224 IPR001351 GO:0003735|GO:0006412
Dere11g1449 274 ProSitePatterns Ribosomal protein S3 signature. 183 219 IPR018280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1449 Dere-ChrDere11 26658604 26661406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1449 37 261 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.778 9.79e-150 417