Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1444 ATGGGAAGGAGTCCTTGCTGTGCTAAGGAAGGTTTGAACAGAGGAGCATGGACTGCTATGGAAGACAAGATCCTCATTGAATACATTAAGATCCATGGTGAAGGAAAATGGAGACACCTACCCAAAAGAGCAGGTCTTAAGAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTAAATTATCTGAGACCTGACATTAAAAGAGGAAATATTACTCGTGATGAAGAGGACCTCATTATCAGACTTCACAAGCTTCTTGGAAACAGGTGGTCATTGATAGCTGGAAGGTTACCAGGACGAACAGACAATGAAATAAAGAATTATTGGAACACCAACATTGGGAAGAAGCTTCAAAATGGAAACTCAAAATCGTCCACAACTACAAGTGGTGGTGCACGTAGCTCCCCGACCACACCGGATCCGGACCCGGACCCGGACCCGAAGTCGCCTCCAAAGACAGGTTCATGCGTGGTCCGAACCAAAGCAACAAGGTGCACCAAGGTGATAGTGAGCAGAGACATTATGCAGCCATTACTGGCTGCACATGCACCTTCCAGCGTGACCGACGACGTGAAAGTGAACAGTGACCATGAGAAAACGGAGTCGGAGTCACCACCTTTTGGCAATTCACCGAAGGAGGGAATCATAAGCAACCCGTTGGATTTCATGGAGGATTTTCAGATGGACGAGAACTTCTTCTCGGATCTTCTGAACATGTACATATCCGAACCACCCTCTTGCTTTGAGGATAATAAGGTTACAGTAGTGGAAGACAGAAACGCCAGCACTAAAAGTGTCGACCGGGCTGGTTTACATCCTCTGACGTCTCCTCCAACATCTAATGACACTCTCTTAAATGTCTCCGAAGATTCTCTGCATGGCTCCGATGAGGGCTTTCAATCAGTGTCGGCTTTGATGGATAATGAATTTGATTGGCTTTGA 939 0.4654 MGRSPCCAKEGLNRGAWTAMEDKILIEYIKIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITRDEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGKKLQNGNSKSSTTTSGGARSSPTTPDPDPDPDPKSPPKTGSCVVRTKATRCTKVIVSRDIMQPLLAAHAPSSVTDDVKVNSDHEKTESESPPFGNSPKEGIISNPLDFMEDFQMDENFFSDLLNMYISEPPSCFEDNKVTVVEDRNASTKSVDRAGLHPLTSPPTSNDTLLNVSEDSLHGSDEGFQSVSALMDNEFDWL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1444 312 MobiDBLite consensus disorder prediction 113 156 - -
Dere11g1444 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere11g1444 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere11g1444 312 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 188 - -
Dere11g1444 312 MobiDBLite consensus disorder prediction 183 212 - -
Dere11g1444 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere11g1444 312 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Dere11g1444 312 CDD SANT 16 61 IPR001005 -
Dere11g1444 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere11g1444 312 MobiDBLite consensus disorder prediction 261 282 - -
Dere11g1444 312 FunFam MYB-related transcription factor 13 66 - -
Dere11g1444 312 Gene3D - 70 135 - -
Dere11g1444 312 MobiDBLite consensus disorder prediction 113 135 - -
Dere11g1444 312 CDD SANT 71 112 IPR001005 -
Dere11g1444 312 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dere11g1444 312 Gene3D - 14 66 - -
Dere11g1444 312 SMART sant 13 63 IPR001005 -
Dere11g1444 312 SMART sant 66 114 IPR001005 -
Dere11g1444 312 FunFam Transcription factor TT2 70 137 - -
Dere11g1444 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1444 Dere-ChrDere11 26558487 26560207 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1444 1 116 MYB Transcription Factor Family AT2G16720 75.000 9.14e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g1444 Myb_DNA-binding 7.8e-15 CL0123