Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1442 ATGGAAAAGCCAATGGCTTTCAGGACTGGTGATGCTAAGAACGATGTGAAGCCAAATGAAGCCATGGAGAACGTGGCTCTCAGCAGAGGAGCTTGGACACCAGAAGAAGATAGAAAACTAGCTGAGGTTATTGCAGTTCATGGCGCAAAAAGATGGAAGTCCATTGCTGTGAAAGCAGGGCTCAATCGATGTGGTAAGAGTTGTAGGTTAAGATGGTTAAACTATCTTAGACCCAACATCAAGAGGGGAAACATATCAGACCAAGAAGAGGATTTAATACTTCGGCTTCATAAACTCCTTGGAAACAGGTGGTCTTTGATTGCTGGAAGGCTACCGGGACGAACAGACAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGACGGAGAAGCATTCAAGTGAGAGTTCAACAAGAAAAGAGAAACAAAGGGCGGTGGTGGAGGAGAAGAAGATTCATGAAAAGACAGAGTTGGTGAGAGAAGAGAATTCCAAAGAGGAAACAAATCAGGACTCGTCATCAAAACCCAGTTTTGATGTGGATAGGTTCTTGGATTTCTCTGAAGAAGAAGATTGTCCATTGAATCTGGAGTGGGTTAGCCAATTCCTTGAACTAGACGAGGAGACTACTCTCGGACTCTTCTCACAATAA 666 0.4294 MEKPMAFRTGDAKNDVKPNEAMENVALSRGAWTPEEDRKLAEVIAVHGAKRWKSIAVKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQTEKHSSESSTRKEKQRAVVEEKKIHEKTELVREENSKEETNQDSSSKPSFDVDRFLDFSEEEDCPLNLEWVSQFLELDEETTLGLFSQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1442 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Dere11g1442 221 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Dere11g1442 221 Gene3D - 86 160 - -
Dere11g1442 221 MobiDBLite consensus disorder prediction 1 20 - -
Dere11g1442 221 FunFam Transcription factor TT2 85 156 - -
Dere11g1442 221 Gene3D - 29 81 - -
Dere11g1442 221 MobiDBLite consensus disorder prediction 133 184 - -
Dere11g1442 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Dere11g1442 221 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Dere11g1442 221 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Dere11g1442 221 MobiDBLite consensus disorder prediction 133 174 - -
Dere11g1442 221 CDD SANT 31 76 IPR001005 -
Dere11g1442 221 SMART sant 81 129 IPR001005 -
Dere11g1442 221 SMART sant 28 78 IPR001005 -
Dere11g1442 221 Pfam Myb-like DNA-binding domain 82 127 IPR001005 -
Dere11g1442 221 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Dere11g1442 221 FunFam MYB-related transcription factor 28 81 - -
Dere11g1442 221 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 22 176 - -
Dere11g1442 221 MobiDBLite consensus disorder prediction 1 18 - -
Dere11g1442 221 CDD SANT 86 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1442 Dere-ChrDere11 26531785 26532764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1442 29 131 MYB Transcription Factor Family AT5G40330 68.932 3.40e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g1442 Myb_DNA-binding 2.6e-18 CL0123