Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1441 ATGGCTTCTGAGACTGATGATTCTATTAAGACCGAAGTGAAGCGAACTGAAGCCACGACAAACATATCTATTAGCAAAGGAGCTTGGACACCAGAAGAAGATAGAAAACTAGCTGAGGTTATTAGAGTTCAGGGCGCAAAAAGGTGGAATTCCATCGCAGTCAAAGCAGGCCTTAATCGGTGTGGTAAGAGTTGTAGACTAAGATGGTTGAACTATCTTAGACCCAACATCAAGAGGGGAAACATATCAGACCAAGAAGAGGACTTGATTCTTCGGCTTCATAAACTCCTTGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTACCAGGCCGAACAGATAATGAGATAAAGAACTATTGGAATTCTCATTTGAGCAAAAAGATAAAGCTGCAGAGCGATAAGCAACGTGGGAGTTCAACAAGAGAAGAGAAACAAAGGGTGGTGGTGGTAGAGGAGGAGATTCTCGAAGAAACGTCTGAGCTAATAAGAGATCAAGAGAATTCCACTGAGGAAGCTGAAGAGCCATCATCAAAACCCAGTTTCGATGGAGATAGGTTCTTTGGTTTCTCTGAAGAAGAAGAAGGTCCATTGAATCTGGAGTGGGTTAGCCACTTCCTTGAGCTAGATGAGCCCACCATTGGAGTCTTTTCGCAGTAA 657 0.4368 MASETDDSIKTEVKRTEATTNISISKGAWTPEEDRKLAEVIRVQGAKRWNSIAVKAGLNRCGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKLQSDKQRGSSTREEKQRVVVVEEEILEETSELIRDQENSTEEAEEPSSKPSFDGDRFFGFSEEEEGPLNLEWVSHFLELDEPTIGVFSQ 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1441 218 CDD SANT 28 73 IPR001005 -
Dere11g1441 218 CDD SANT 83 124 IPR001005 -
Dere11g1441 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Dere11g1441 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Dere11g1441 218 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Dere11g1441 218 Pfam Myb-like DNA-binding domain 79 124 IPR001005 -
Dere11g1441 218 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Dere11g1441 218 MobiDBLite consensus disorder prediction 159 189 - -
Dere11g1441 218 Gene3D - 26 78 - -
Dere11g1441 218 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Dere11g1441 218 FunFam MYB-related transcription factor 25 78 - -
Dere11g1441 218 SMART sant 78 126 IPR001005 -
Dere11g1441 218 SMART sant 25 75 IPR001005 -
Dere11g1441 218 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 19 165 - -
Dere11g1441 218 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Dere11g1441 218 MobiDBLite consensus disorder prediction 160 189 - -
Dere11g1441 218 Gene3D - 82 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1441 Dere-ChrDere11 26525998 26527007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1441 26 130 MYB Transcription Factor Family AT5G40330 70.476 3.25e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere11g1441 Myb_DNA-binding 1.6e-17 CL0123