Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1426 ATGCCCTTCGCAAGGCTTCAATTCAAAACCTGTCTCCTTGGCTGCTTCAACGCCAAGACGAATAACCCATCCTTGGATCAAACTGTAGTTTCCAAAAAGACACCTTCAAGGAGACTATTTCTCTCTGATGTAAGCAATGCTTCATCTTTGTCTATCATGAGTGATTTATCCAACTCTGTTCTTGGGTCAAATCTTCATATTTTCAGCTACAAGGAGCTCAGAGAGATCACTCACAACTTCTGCAAAACCAGTGTTCTTGGGGAAGGTGGGTTTGGGAAGGTGTATAAAGGGTTCATTGATGACAAGCTTAGGCCTGGATTAAAAGCTCAGGTTGTAGCAGTTAAGGTGTTAGACTTAGATGGGAAACAAGGCCATAGAGAGTGGTTGGCTGAAGTAATTTTTCTGGGGCAGTTGAAGCATCCCCATCTAGTGAACCTACTTGGGTATTGCTGTGAAGATGCGCACAGGCTTCTGGTGTACCAATACATGGAAAGGGGCAATCTAGAGGACAAGCTTTTCAAAGGCTATTTAGCAACCTTGCCATGGCTAACAAGAATCAAAATAGCAATTGGGGCTGCAAAGGGTCTTGCTTTTCTTCATGAAGAAGAGAAACCAGTCATATACAGAGATGTTAAAGCCTCAAACATACTGTTAGACGCTGAGTACAATGCCAAACTCTCTGATTTTGGGCTAGCAATAGACGGTCCAGAAGAAGATCAAAGCCATATCACAACTAGAGTTATGGGTACCCATGGCTATGCAGCCCCTGAGTATATCATGACAGGACATTTAACAACAATGAGCGATGTATACAGCTTTGGGGTGGTTCTCTTAGAGCTACTTACAGGAAAGAGATCTGTGGACAAGAATCGACCTCCAAGAGAGCAGGATTTGGTAGAGTGGGCAAGACCTCTTCTGAAAGATACCCACAAACTCGAAAGAATAATGGATCCAAGACTGGAGGGTCAGTACTCCATTGAAGGGGCTAGAAAGGTGGCCGCTTTGGTTCACCAATGTCTTGGCCATCAGGCTAAGGCTCGACCCTCAATGCGCACCGTGGTCAAGTCCTTGGAGCCTATCATGAACCTCACTGATATGCCACTTGGCCATTTTGTCTATGTCGTACCCATTGAGGGAGATATCGAAGGTTCGGTACACAAGGATTCTGTAAAAGGAGAGAACGGGAATGAAGAGGAGACGGAGGAGATGAAAGAGAAAGAGAAAGAGAAGGAGAAAGAGACGAAGGGACGACAGAGGAATCGAAAAAGTCGGAGGCGTAGACGACAGGTTAAACCACTGGGGTCTCGTGCCGTTTACACTGATACGACGCTGTATAAAACTCTGGGTACTAGTTTGTACACTTTCAAGCAAGCACCAGAAGAAACAGATGAAGATAAATCACCTTCTATTAGTGTAATAAATTGA 1425 0.4456 MPFARLQFKTCLLGCFNAKTNNPSLDQTVVSKKTPSRRLFLSDVSNASSLSIMSDLSNSVLGSNLHIFSYKELREITHNFCKTSVLGEGGFGKVYKGFIDDKLRPGLKAQVVAVKVLDLDGKQGHREWLAEVIFLGQLKHPHLVNLLGYCCEDAHRLLVYQYMERGNLEDKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDAEYNAKLSDFGLAIDGPEEDQSHITTRVMGTHGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKRSVDKNRPPREQDLVEWARPLLKDTHKLERIMDPRLEGQYSIEGARKVAALVHQCLGHQAKARPSMRTVVKSLEPIMNLTDMPLGHFVYVVPIEGDIEGSVHKDSVKGENGNEEETEEMKEKEKEKEKETKGRQRNRKSRRRRRQVKPLGSRAVYTDTTLYKTLGTSLYTFKQAPEETDEDKSPSISVIN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1426 474 FunFam Serine/threonine-protein kinase PBS1 163 369 - -
Dere11g1426 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Dere11g1426 474 FunFam Serine/threonine-protein kinase BIK1 47 162 - -
Dere11g1426 474 MobiDBLite consensus disorder prediction 417 432 - -
Dere11g1426 474 ProSitePatterns Protein kinases ATP-binding region signature. 86 115 IPR017441 GO:0005524
Dere11g1426 474 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
Dere11g1426 474 PANTHER OS01G0588500 PROTEIN-RELATED 46 360 - -
Dere11g1426 474 Coils Coil 396 416 - -
Dere11g1426 474 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672|GO:0006468
Dere11g1426 474 CDD STKc_IRAK 86 360 - -
Dere11g1426 474 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1426 474 Gene3D Phosphorylase Kinase; domain 1 51 162 - -
Dere11g1426 474 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Dere11g1426 474 MobiDBLite consensus disorder prediction 455 474 - -
Dere11g1426 474 MobiDBLite consensus disorder prediction 385 439 - -
Dere11g1426 474 SMART serkin_6 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1426 474 MobiDBLite consensus disorder prediction 385 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1426 Dere-ChrDere11 26282140 26284454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1426 66 404 Glycoside Hydrolase AT3G07070 48.538 3.96e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere11g1426 PK_Tyr_Ser-Thr 9.1e-47 CL0016