Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1406 ATGTCAACTTTCTCCGTTACGGCGGCGGATGGCCGGAGGGCCGGCAAGGCGGCTGAGAGGTCCAGTTTCACCCAGACTTGCAATCTCATAAGCCAGTTCTTGAAGGAGAAGCGGAGTTCTGGAGCTTTGAACCTTGGAATGTGTGCGAACATGGAACCCAGAGCTACTACGATGGACTTGTTAACGAACCTGGAAAAAACTGATGATACTTCGAGACGAAATGCTTCAGCTAATGGTTTTCTTCGTCAGTTTGTGGGAAACCAGTCTGATTTCAGTTCACCGGCCAGAGCAGAGCCTAATACTCCCCAAATGGCAATATTCTACGCCGGAAAAGTGTTGGTGTTTGATGATTTTGCGCCGGAGAAGGCGACGGAGATCATGGAACTAGCCACCAAATTAAGCTCTAATAATTCTGGGGTTATCAAAAACTCCCAAAGTCCTCCTGAAAATATGAACGTGGTCAAGGTGCCTCCAACAAAAACAGCCCAAGAAGCTTCACGGCCTGGATCTCATGCGTTCGGTTCAGATATGAGGTACCCCAGGAGAGCTTCGCTTCTAAAATTTCTGGAGAAAAGAAAAGAAAGGGTCATTGCAAGAGGACCTTACCATTTGAACCCCAAGCATGAGGGAGGCTATTCTGGAGGCCAGCCTGAAGATCAGTCTTGGAAATCCTTTGACCTTAACTTATAG 690 0.4768 MSTFSVTAADGRRAGKAAERSSFTQTCNLISQFLKEKRSSGALNLGMCANMEPRATTMDLLTNLEKTDDTSRRNASANGFLRQFVGNQSDFSSPARAEPNTPQMAIFYAGKVLVFDDFAPEKATEIMELATKLSSNNSGVIKNSQSPPENMNVVKVPPTKTAQEASRPGSHAFGSDMRYPRRASLLKFLEKRKERVIARGPYHLNPKHEGGYSGGQPEDQSWKSFDLNL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1406 229 ProSiteProfiles Tify domain profile. 97 132 IPR010399 -
Dere11g1406 229 SMART tify_2 97 132 IPR010399 -
Dere11g1406 229 Pfam tify domain 99 130 IPR010399 -
Dere11g1406 229 Pfam Jas motif 181 202 IPR018467 -
Dere11g1406 229 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 14 205 IPR040390 -
Dere11g1406 229 MobiDBLite consensus disorder prediction 198 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1406 Dere-ChrDere11 25988598 25989995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1406 19 213 Tify Gene Family AT1G19180 33.188 7.18e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Dere11g1406 tify 3.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1406 11 25988598 25989995 Dere11g1406 11 25988598 25989995 ECH