Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1405 ATGCAGAATCCTAGGCTGAAGCAGCAGCAGCAGCAAGCTCTGATGCAACAAGCTCTTATGCAACAACAGTCTCTCTACCACCCTGGCCTCTTAGCTGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAATATCCATATGCAAGTAACCGAGCCACTTCTTCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTTTTAGAAAGGAGAAGTCATCCTATGGTTTCATTCACTACTTCGATCGCAGATCCGCTGCTCTTGCCATATTATCTCTCAATGGAAGGCATCTATTTGGCCAGCCTATTAAAGTTAACTGGGCGTATGCTAGTGGTCAGAGAGAGGATACATCAGGTCATTACAACATATTTGTTGGTGATCTCAGTCCTGAGGTTACTGATGCTACATTATTTGCATGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGAGTTATGTGGGATCAAAAGACTGGACGTTCAAGGGGGTTTGGGTTTGTTTCGTTTCGAAATCAACAGGATGCACAAAGTGCCATAAATGATTTAACTGGTAAGTGGCTTGGTAGTAGACAAATACGCTGTAACTGGGCAACAAAAAGTGCTGGTTCTAGTGAAGACAAGCAGAACTTGGATACTAGAAGTGTGGTTGAACTAACAAATGGCTCATCTGAAGATGGTAAGGAGACAACTAATAGTGATGCCCCAGAGAACAATCCTCAATACACTACTGTCTATGTGGGCAACCTTGCTCCAGAGGTAACCCATATTGATCTTCATCGCCACTTCCATGCTCTTGGGGCTGGAGTGATGGAGGAGGTTCGAGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCGCTGGCTATTCAGATGGGGAATACTCAATCTATTCTATGCGGAAAACAAATTAAGTGCTCCTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCGCCTGCAGCTGCACCTCTGCCCAGCCTCTCTGCATCTGATCTTTTGGCCTATGAGCGTCAGCTAGCAATGAGCAAGATGGGTGGTGTCCATGCCCTGATGCATCCCCAAGGACAGCATCCTCTTAAACAGGCAGCACCTGGAGCAAGCCAAGCAATATACGATGGTGGATTCCAGAATGCTGCTGCTGCACAGCAAATGATGTACTACCAGTGA 1257 0.4662 MQNPRLKQQQQQALMQQALMQQQSLYHPGLLAAPQIEPIPSGNLPPGFDPSTCRSVYVGNIHMQVTEPLLQEVFASTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKSAGSSEDKQNLDTRSVVELTNGSSEDGKETTNSDAPENNPQYTTVYVGNLAPEVTHIDLHRHFHALGAGVMEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWGSKPTPPGTASNPLPPPAAAPLPSLSASDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAPGASQAIYDGGFQNAAAAQQMMYYQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1405 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 128 IPR000504 GO:0003723
Dere11g1405 418 Gene3D - 139 223 IPR012677 -
Dere11g1405 418 FunFam oligouridylate-binding protein 1B-like isoform X2 1 136 - -
Dere11g1405 418 CDD RRM1_PUB1 56 126 - -
Dere11g1405 418 Gene3D - 237 339 IPR012677 -
Dere11g1405 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 211 IPR000504 GO:0003723
Dere11g1405 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 328 IPR000504 GO:0003723
Dere11g1405 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Dere11g1405 418 FunFam Oligouridylate-binding protein 1C 237 339 - -
Dere11g1405 418 SMART rrm1_1 55 124 IPR000504 GO:0003723
Dere11g1405 418 SMART rrm1_1 261 331 IPR000504 GO:0003723
Dere11g1405 418 SMART rrm1_1 140 213 IPR000504 GO:0003723
Dere11g1405 418 CDD RRM2_PUB1 138 217 - -
Dere11g1405 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 52 338 - -
Dere11g1405 418 MobiDBLite consensus disorder prediction 236 257 - -
Dere11g1405 418 SUPERFAMILY RNA-binding domain, RBD 251 342 IPR035979 GO:0003676
Dere11g1405 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Dere11g1405 418 SUPERFAMILY RNA-binding domain, RBD 133 224 IPR035979 GO:0003676
Dere11g1405 418 SUPERFAMILY RNA-binding domain, RBD 38 132 IPR035979 GO:0003676
Dere11g1405 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 335 IPR000504 GO:0003723
Dere11g1405 418 FunFam oligouridylate-binding protein 1-like isoform X2 137 232 - -
Dere11g1405 418 Gene3D - 1 138 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1405 Dere-ChrDere11 25977275 25983661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1405 49 336 Eukaryotic Initiation Factors Gene Family AT4G34110 29.373 6.35e-24 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1405 11 25977275 25983661 Dere11g1405 11 25977275 25983661 ECH