Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1389 ATGGACGACGACGACAAGATCCAGTCGCCATCGTCTCCGGCGAGCGGATCCCAGGGTTCCCCGAGGGCGAACGGTCGGATAACGGTGACGGTGGCAGCGCCGGCGCCGGTGCCGCCGCAGAACAGTTTGGCACTAGCTCTTCCGGTCCAGCACCAGCAGCCGAAGGGTAATGGTGGTGGTGGAGGGAGGGAGGATTGCTGGAGTGAAGGAGCGACGGCGGTTTTGATCGACGCGTGGGGGGAGAGGTACTTGGAGCTGAGTAGGGGGAATCTGAAGCAGAAGCACTGGAAGGAGGTTGCGGATATCGTGAGTAGCAGGGAGGATTACAGGAAAACCCCCAAGACTGACATTCAGTGCAAGAATCGGATCGATACGGTTAAAAAGAAGTACAAGTTGGAGAAGTCGAAGATCGCAGCTGGTGGTGGACCAAGTAAGTGGCCGTTCTACGAGAGATTAGACCACTTGATCGGTCCGTTTGCGAAAATTTCTGGCTCTACAGGCGGTGGCGGTTCCGCCGGTGCTAGTACGGTGAACAATTTGCAAACTCAGAAAGTTCCTCTTGGAATTCCAGTAGGAATTCGGGGAGTGAGTCAGAATCAGAATCAGTATCAAGCTCATCAACGGCTGCAGAAGCAGCAGCCTCGGTTGAAGACACAGAGCCCGAAGATACAGTTCCGGAAGCGTGCTCCGGTGGACTCAGATTCGTCACCGTCGGAGAGAGAACCATCGCCGGTTTCTAGCGATAGTTTTCCACCGGATACATATGAGAGGAAGAGACCTAGAGTGCCTAGAGAGATCAATTCCAATGCTGTAGAAACGAAGGATAAGGGTTGGGGAAGTGCTGTCAGGGAACTGACGCAGGCGATACTGAAATTCGGGGAAGCCTATGAGCAAGCGGAGAGCGCGAAGATTCAGCAGGTGGTGGAAATGGAGAAGCAAAGGATGAAATTTGCGAAGGAGATGGAACTGCAGAGAATGCAGTTTTTCATGAAGACTCAATTGGAGATTTCGCAGCTGAAGCATGGGAGGAGAGGAGGAGGAAACGCCAGCAACCATCATAGCAGCATCAACAATAACAATAATAGTGACAGCGATAACCTGGTTAGATTGGATTAG 1116 0.5278 MDDDDKIQSPSSPASGSQGSPRANGRITVTVAAPAPVPPQNSLALALPVQHQQPKGNGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYRKTPKTDIQCKNRIDTVKKKYKLEKSKIAAGGGPSKWPFYERLDHLIGPFAKISGSTGGGGSAGASTVNNLQTQKVPLGIPVGIRGVSQNQNQYQAHQRLQKQQPRLKTQSPKIQFRKRAPVDSDSSPSEREPSPVSSDSFPPDTYERKRPRVPREINSNAVETKDKGWGSAVRELTQAILKFGEAYEQAESAKIQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHGRRGGGNASNHHSSINNNNNSDSDNLVRLD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1389 371 MobiDBLite consensus disorder prediction 200 220 - -
Dere11g1389 371 FunFam trihelix transcription factor ASIL2 67 132 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 8 25 - -
Dere11g1389 371 Gene3D - 67 132 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 236 250 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 339 371 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 252 271 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 348 371 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 1 66 - -
Dere11g1389 371 MobiDBLite consensus disorder prediction 200 272 - -
Dere11g1389 371 Pfam Myb/SANT-like DNA-binding domain 64 155 IPR044822 -
Dere11g1389 371 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 37 343 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1389 Dere-ChrDere11 25771892 25773007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1389 1 355 Trihelix Transcription Factor Family AT3G14180 49.539 1.20e-107 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere11g1389 Myb_DNA-bind_4 5.4e-26 CL0123