Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1378 ATGGCCGCCACCACCGCCCCCGCGCCGCCGCGGCAGCTGTCGCAGAAGGAAGCTGACATCCAAATGATGTTAGCAGCTGAGGTGCACTTGGGAACAAAAAACTGTGATTTTCAAATGGAGCGATATGTTTTCAAGCGCCGGAACGATGGTATTTACATTATAAATCTTGGAAAAACATGGGAGAAGCTACAGCTTGCTGCTAGGGTTATTGTTGCCATTGAGAACCCTCAGGATATTATTGTTCAGTCTGCCAGGCCATATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAGTACACTGGCGCTCATGCTATTGCCGGAAGGCACACCCCTGGTACATTCACTAATCAGCTCCAGACATCGTACAATGAGCCTCGCCTCCTCATTCTAACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCACTTGGAAATATACCAACAATTGCTTTCTGTGATACTGATTCTCCCATGAGATATGTTGACATTGGGATTCCTGCAAATAACAAGGGAAAACATAGCATCGGTTGTCTCTTTTGGCTTCTAGCAAGAATGGTACTGCAGATGCGGAGTACTATTCGTCCTGGGCATAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGGGAACCTGAAGAGGCCAAGCAACAGGAGGAAGATGAAGTGCCGGTTGCTCCTGAGTATGCCATTGCAGACTTCAATGCAGCCGCAATTGGTGGTTTGCCTGCTGATGGTCAGTGGCCTGCTGCTATTGATCAACCATGGACTGAAGCTGTTCCACCACCAATTCCTGCTGCCCCAGGTGTCAACTGGACCCCAGAAGCTGGAGATTGGGGAGAGTCTGTTCCAACTCCACAAATTCCTGCTCCCGCTATTGATTCTGTTCCTCCTACTGGCTGGGAATAA 909 0.484 MAATTAPAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRSTIRPGHKWDVMVDLFFYREPEEAKQQEEDEVPVAPEYAIADFNAAAIGGLPADGQWPAAIDQPWTEAVPPPIPAAPGVNWTPEAGDWGESVPTPQIPAPAIDSVPPTGWE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1378 302 PANTHER 40S RIBOSOMAL PROTEIN SA 10 286 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dere11g1378 302 Gene3D - 19 224 - -
Dere11g1378 302 FunFam 40S ribosomal protein SA 19 225 - -
Dere11g1378 302 Hamap 40S ribosomal protein SA [rps-0]. 7 282 IPR027498 GO:0003735|GO:0006412|GO:0015935
Dere11g1378 302 NCBIfam 30S ribosomal protein S2 15 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Dere11g1378 302 MobiDBLite consensus disorder prediction 265 302 - -
Dere11g1378 302 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 ProSitePatterns Ribosomal protein S2 signature 1. 20 31 IPR018130 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Dere11g1378 302 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 Pfam Ribosomal protein S2 23 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 Pfam Ribosomal protein S2 120 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Dere11g1378 302 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1378 Dere-ChrDere11 25661227 25663409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1378 1 302 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 70.066 1.61e-152 426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1378 11 25661227 25663409 Dere11g1378 11 25661227 25663409 ECH