Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1369 ATGTGTGGAGGTGCTATTATCTCTGATTTCATTCTTCCGGCTGCAGCTAGGTCTCGCCGGCTTACCGCTGATTTCCTATGGCCGGATTTGAAGAAACCCAGTTCAGGGAAGCGAGGCTCGAAGCCCTATAGGTCTGAGGTCGTGGATTTGGACGACCATTTTGAAGCTGCTTTTAGGGAATTCAAGGACGATTCCGATATCGATGAGGTGGATGTAGATGATGATTTGCTATTCGATGTCAAGCCCTTTGGTTTTTCCGCCTCCAAACCCTCCAAGCCTACCAAATCCCTTTCTCGTGGATCTGGTGCTGTAAAACCTGTGGAATTCAATGGGCAAGCTAATAAGCCTGAGAAGAGAAAGAGGAAGAATATCTATAGGGGGATTCGTCAGCGCCCATGGGGAAAATGGGCAGCTGAGATCCGGGACCCAGGAAAGGGTGTTCGTGTCTGGCTTGGAACTTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGACGCTTCTAGGGTTCCCACAAAGCGTTACAAGGCAAATCTGAACTCTGTTCAGCCCAAAGTGAACCAGAAATTCAATGTTGAAAACAATCCAGAAGATTACTACTGTCATATGGGGCTGATGGAACAGAAACCCCTGGTTAATCAGTATGCTGACATAGGAGCCTTCCCCAGCAGTGATGGGGTCGCGTCACTCACACCAGCAGATGATGTTACTCTTTGTTTCAGTTCAGATCAAGCAAGTAACTCATTTGATTATTCTAGTCTTGGATGGGGTGAACAGGGTCCTAAGACTCCTGACATCTCATCCATTCTTTCTGCTTCTATGGAAGATGAATTTCAAGCTGTGAAAGATGCCAACCAGGAGAAGAACATTCCTAACTCTCAGGGAGTGTTGTCTGTGGAAAATAATTCTGCAAAGACACTGTCGGAGGAACTCAGAGACATCGAATCCCAGTTGCAGTTCTTTCAGATGCCTTATCTTGATGGGAGCTGGGAAAATGCTTCATTGGAAACCTTGCTTGGTGGAAACACAACTCAGGATGGTGGAAACCCAATCGACCTGTGGAGCTTTGATGACCTATCTACCATGGCGGAGGGAGTTTTCTGA 1155 0.471 MCGGAIISDFILPAAARSRRLTADFLWPDLKKPSSGKRGSKPYRSEVVDLDDHFEAAFREFKDDSDIDEVDVDDDLLFDVKPFGFSASKPSKPTKSLSRGSGAVKPVEFNGQANKPEKRKRKNIYRGIRQRPWGKWAAEIRDPGKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDDASRVPTKRYKANLNSVQPKVNQKFNVENNPEDYYCHMGLMEQKPLVNQYADIGAFPSSDGVASLTPADDVTLCFSSDQASNSFDYSSLGWGEQGPKTPDISSILSASMEDEFQAVKDANQEKNIPNSQGVLSVENNSAKTLSEELRDIESQLQFFQMPYLDGSWENASLETLLGGNTTQDGGNPIDLWSFDDLSTMAEGVF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1369 384 Coils Coil 314 334 - -
Dere11g1369 384 SUPERFAMILY DNA-binding domain 124 182 IPR016177 GO:0003677
Dere11g1369 384 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Dere11g1369 384 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Dere11g1369 384 Pfam AP2 domain 125 173 IPR001471 GO:0003700|GO:0006355
Dere11g1369 384 Gene3D AP2/ERF domain 124 182 IPR036955 GO:0003700|GO:0006355
Dere11g1369 384 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Dere11g1369 384 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Dere11g1369 384 PANTHER DNA-BINDING DOMAIN 96 323 IPR044808 GO:0003700|GO:0009873
Dere11g1369 384 FunFam Ethylene-responsive transcription factor 2 123 182 - -
Dere11g1369 384 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Dere11g1369 384 MobiDBLite consensus disorder prediction 88 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1369 Dere-ChrDere11 25562448 25564459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1369 1 384 AP2-EREBP Transcription Factor Family AT3G14230 45.388 2.71e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere11g1369 AP2 1.8e-12 CL0081