Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1367 ATGGCTTCTTCTTCTTCTTCACCAAAAACCGCGAAGAAGCCAAGCAAAGGGAGGCAGAAGATCGAAATCAAGAAAGTGGAACAAACCAACAAGCGCTACGTCACCTTCTCCAAACGCAAATTAGGGCTCTTCCGCAAAGCTGCCGAGCTCTCCCTCCGCTGCGACTCCCAAATCGCTGTCATCATCTTCTCCCAGCACGGCAAGGTCTTCTCCTCCGGCCATCCCGACCCGGACTCCGTCATCCGCCGCTACCTCTCTGGCTGTGGCTCTTCGTCCTCCTCGTCGTCGTCGAACGTTCCACCGGTCATTCATGATCCGACAACAGAGTGGACGATGTCGTCGTTGAGGCGGGAATACGAGGAGGCGATGAAGGTGTTAGAGGTGGAGAAGAAGTCACTGGAAGAAGTAAGGGCAGAGACTCTCGGGTCGGGTTTTGGACACGGGTTTTGGTGGGAACGCCCGATTGGGAATATGGGTTTGGAGGAAGTTGTGCAGTTCAAGGAGTGTGTTGAACAACTGAGACAGAATTTGGTTGCCGCGGCGGAGAAGAAGACTAGTTTGATGAACTCGCCGCCACCGCCGTCACCGTCACTATTGTCGATGGATGCGACGGAGTTTTCTTATCTTTCTCTGTTGAACGGGGACATGTTTGAGACTAATCAAGCATGGGATTTTTGGAATGGTGAAGTTAGCGATAGTTCTTGCATGGTTTATGATAGTCTTGACCATTATTACTGA 738 0.5163 MASSSSSPKTAKKPSKGRQKIEIKKVEQTNKRYVTFSKRKLGLFRKAAELSLRCDSQIAVIIFSQHGKVFSSGHPDPDSVIRRYLSGCGSSSSSSSSNVPPVIHDPTTEWTMSSLRREYEEAMKVLEVEKKSLEEVRAETLGSGFGHGFWWERPIGNMGLEEVVQFKECVEQLRQNLVAAAEKKTSLMNSPPPPSPSLLSMDATEFSYLSLLNGDMFETNQAWDFWNGEVSDSSCMVYDSLDHYY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1367 245 Gene3D - 29 104 IPR036879 GO:0003677|GO:0046983
Dere11g1367 245 Coils Coil 170 190 - -
Dere11g1367 245 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Dere11g1367 245 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Dere11g1367 245 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Dere11g1367 245 Coils Coil 112 139 - -
Dere11g1367 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 71 IPR002100 GO:0003677|GO:0046983
Dere11g1367 245 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Dere11g1367 245 SUPERFAMILY SRF-like 17 95 IPR036879 GO:0003677|GO:0046983
Dere11g1367 245 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Dere11g1367 245 PANTHER MADS BOX PROTEIN 18 177 - -
Dere11g1367 245 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1367 Dere-ChrDere11 25546862 25547599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1367 13 183 Type I MADS-box Gene Family AT5G60440 34.444 2.90e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere11g1367 SRF-TF 8.8e-19 No_clan