Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1364 ATGATGTTTCATCCTGGAGGAATTTCGAAACAAACTTGTAGTCTACTTGCTGTCACATGTGGCAAAAGTTTTGAGCATGAGTTTGAGGAGAAACTCCCGCAAAATCAGCCCAAATATCCTTTCCCTGAGTTAGCTTCTTCCGGACGTCTGGAGGTTCAAACTCTAAGCAATCCAGAAAAAGAACAGTTTCGAAAAGTTCTCGAGTCTTATCAACCAAATTTTGTATATTTACAAGGAGAGCAGCTTTCGAATGGTCAAGTTGGTTCTTTGATCTGGCAAGGCGAAGAATTGGCCACTTCTGAAGCTATATTAGAGCTCTTTGGTCCCACATTGCCAACAGCCGTTTACTTGGAAATCCCAAATGGAGAAACTTTGGCAAAAGCTCTTCATCTTAAGGGAGTTGCATATGTGATTTATTGGAAGAATACTTTTTCTTGTTATGCTGCTTGCCATTTTCGTCAGGCATTTCTTTCAGTGGTGCAGAGTTCGTCTACGCATACATGGGATGCCTTTCACCTTGCGCATGCTTCTTTTGAGCTTTACTGTGTTCAAACCAATCAAGTCCTTCCTGCTGAGAGTCTTGATGCTAGTGGCAATATAGGGCCACACCTTGTTGGAGACTGTCTGAAAATCAATGTTGACCCACCTGAGTTGTGTGAAGAAGATGAAGAAAATTCCTCGGGCAGTCTTCCTGCTATAAAGATACATGATGATGACGTGAACTTGAGATTTCTCATCTGTGGTGCACCTGCCACTGTTGATGAGTCAATGTTGAGATCATTGGAGGATGGACTCACAGCACTCTTAAACATTGAAATACGTGGGAGCAAGCTCCATGGCAAGTTTAGTGCACCCCCACCACCTCTTCAGGCAGCTGCTTTTTCTCGTGGAGTTGTGACCATGCGATGTGATATATCAACATCTAGTTCAGCCCATATTTCACTTCTTGTGTCTGGTAGTGCACAAACTTGCTTCAACGATCAGTTGTTGGAGAATCATATAAAAAATGAGATAATTGAGAACAGTCAACTAGTTCATGCACAAATTAATAAGGATAACAAACAGCATCTCTCTGAACCTCGGAGATCTGCCTCAATTGCTTGTGGAGCAGCTGTATTTGAAGTTTGCTTGAAGCTTCCTCTTTGGGCTTCACAGGTTTTGAGACAGCTAGCACCTGATGTTACTTATCGAAGTTTAGTTGCACTTGGGATTGCTAGCATTCAGGGGTTGCCTATTGCTTCATTTGAGAAAAATGATGCTGAGCGCTTGCTTTTCTTTTATCAAGGCCATGAGAAAGAAAGTTCTGCAGACAATATACTTTTCAGCAGCCCCCCTGCTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGAATGAGCCAAGCCCAGAGGCCAGCCCTGGCCTTCACGATGGGCAAGGTACTGCTCGAAAAGCAGATGATGAAGGAAAAGACACAAAAATGGTGAATGGATTTAGTACACCCTTAACTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCCATTCCTCATGTTTGTCGCCATAGAATGACACTCTTGTCTGGGCCTTCTGAGACTGATGGCTATGATGGTGCCCAAGTTGAAGCTAGTTTGCCACCTGTTGTCCCAACAAAACGCAGTACTACTGGTTCAAGTTCTGCAACACAGAGAAGATCGTTTTCAGGCTCAGCTCAGTCTAAGCAGGTTATTTCCTTGAACCCACTGCCATTGAAAAAACATGGTTGTGGGAGAGGCTCGATACAAACTTGCTCTGAGGAGGAATTTCTGAAAGATGTCATGGAGTTTCTAATTCTTCGGGGACATAGTAGACTAATTCCTCAAGGAGGGCTTGCTGAGTTCCCTGATGCCATACTCAATGGGAAACGACTTGATCTCTACAACTTGTATAAAGAGGTTGTTACAAGGGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAAGGACAAATCTTCTCAAAGATGCGCAATTACACAACCACTAATAGAATGACTGGTGTTGGCAATACGCTGAAAAGGCATTATGAAACTTACCTTCTAGAATATGAATTAGCACACGATGATGTGGATGGAGAGTGCTGCTTGTTGTGTCACAGTAGTGCAGCTGGGGATTGGGTTAATTGTGGCATATGTGGCGAGTGGGCCCACTTTGGGTGTGACAGACGGCAAGGTCTTGGAGCATTTAAGGATTATGCAAAAACAGATGGACTAGAATATATTTGTCCTCATTGTAGCGTTACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTATTCTCAGGGGTCAATGGCATCTAGACCCCTTTGA 2334 0.4353 MMFHPGGISKQTCSLLAVTCGKSFEHEFEEKLPQNQPKYPFPELASSGRLEVQTLSNPEKEQFRKVLESYQPNFVYLQGEQLSNGQVGSLIWQGEELATSEAILELFGPTLPTAVYLEIPNGETLAKALHLKGVAYVIYWKNTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLAHASFELYCVQTNQVLPAESLDASGNIGPHLVGDCLKINVDPPELCEEDEENSSGSLPAIKIHDDDVNLRFLICGAPATVDESMLRSLEDGLTALLNIEIRGSKLHGKFSAPPPPLQAAAFSRGVVTMRCDISTSSSAHISLLVSGSAQTCFNDQLLENHIKNEIIENSQLVHAQINKDNKQHLSEPRRSASIACGAAVFEVCLKLPLWASQVLRQLAPDVTYRSLVALGIASIQGLPIASFEKNDAERLLFFYQGHEKESSADNILFSSPPAWLKPPPPTRKRNEPSPEASPGLHDGQGTARKADDEGKDTKMVNGFSTPLTPARQRLKVSAMRPIPHVCRHRMTLLSGPSETDGYDGAQVEASLPPVVPTKRSTTGSSSATQRRSFSGSAQSKQVISLNPLPLKKHGCGRGSIQTCSEEEFLKDVMEFLILRGHSRLIPQGGLAEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGVANGYSQGSMASRPL 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1364 777 MobiDBLite consensus disorder prediction 523 566 - -
Dere11g1364 777 SMART ARID_2 587 690 - -
Dere11g1364 777 MobiDBLite consensus disorder prediction 543 566 - -
Dere11g1364 777 ProSiteProfiles ARID domain profile. 590 694 IPR001606 GO:0003677
Dere11g1364 777 CDD PHD_ARID4_like 700 751 - -
Dere11g1364 777 CDD ARID 592 690 - -
Dere11g1364 777 SUPERFAMILY ARID-like 590 705 IPR036431 GO:0003677
Dere11g1364 777 Gene3D - 587 693 IPR036431 GO:0003677
Dere11g1364 777 SUPERFAMILY FYVE/PHD zinc finger 693 757 IPR011011 -
Dere11g1364 777 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 757 IPR013083 -
Dere11g1364 777 MobiDBLite consensus disorder prediction 445 459 - -
Dere11g1364 777 MobiDBLite consensus disorder prediction 438 501 - -
Dere11g1364 777 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 774 IPR042293 -
Dere11g1364 777 Pfam ARID/BRIGHT DNA binding domain 593 690 IPR001606 GO:0003677
Dere11g1364 777 SMART bright_3 591 695 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1364 Dere-ChrDere11 25490193 25498968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1364 2 766 ARID Transcription Factor Family AT3G43240 61.118 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere11g1364 ARID 2.4e-14 CL0123