Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1351 ATGAGCAAGTTAAAACAAATGTTCGCCGGAATCTCAAATTCCGGCAACCACAAGAAGAACAAGAAGCTCTTCTTGGCTCTGTCTTCCACTCTGTTACTCGTCGCCGCCGTGATCGGCATCGTCGCCGGAGTAAACTCCCGCCACAAATCTTCCGGTGGGGATAATTTGAATTACTCCACCCATCCATCCCACGCCATAGTCAAATCCGCTTGCAGTTCCACATTGTACCCCGAGCTCTGCTTCTCCGCTATCTCTTCTGAGCCTGGGTTCACCAAGAAGGTCTCCTCCCACCGCGACGTCATCGAATTGTCGCTAAATATAACCACCAGAGCCGTCGAGCACAATTTCTTCACTGTCGAGAAGCTTATCGCAACCCGAAAGGACAGCCTCACGGTGAGAGAGAAAACGGCTCTCCACGATTGTTTAGAGACGATCGACGAGACGCTCGACGAGCTTCACACCGCCGTGGAGGATCTGAAAGAGTATCCGAACAAGAAGACTCTGTACCAGCACGCCGACGATCTGAAGACTCTGATCAGTGCCGCCATAACCAACCAGGTCACGTGCCTCGACGGATTCTCGCACGACGGCGCCGATAAGAAAGTCAGGGGAGCTCTGGAGGCAGGGCAGGTGCACGTGGAGCGCATGTGCAGCAATGCTCTGGCGATGATTAAGAACATGACAGACACGGATGTGGCGAACTATGAGAAGAAGATGGGAATTACTAAGAGCAGGAGGCTGATGGCGGCGACGGCGGAGGATGGCGGTGTGCAGTGGCCGGAGTGGATGTCGGCGTCGGACAGGCGGTTGCTGCAGGCATCGGAGGTGAAGCCGGACGCGGTCGTAGCGGCGGACGGAAGTGGTGATTTTAAGACGGTGTCGGCGGCAGTGGCGGCGGCGCCGCAGAAGAGTAGTAAGAGATATGTGATTAAGATCAAAGCTGGAGTTTACAGAGAGAATGTGGAGGTGCCGAAGAAGAAGACGAATATTATGTTCCTGGGAGATGGAAGAGCCAATACTATCATTACAGGAAGCAGAAATGTTGTTGATGGTAGCACAACCTTCCATTCCGCCACTGTTGCCGTAGTCGGAGAACGATTCTTAGCCCGCGACATAACCTTTGAGAACACCGCCGGCCACGCCAAACACCAAGCCGTCGCCCTCCGAGTCGGCGCCGATCTTTCGGCCTTCTACAACTGCGACATCCTCGCCTACCAAGACACCCTCTACGTCCACAACAACCGCCAGTTCTTCATCAACTGCCTCGTTGCCGGCACCGTCGACTTCATCTTCGGCAATGCCGCGGCCGTATTCCAAGACTGCGACATCCACGCCCGCCGCCCCGGCTCCGGCCAGAAGAACATGGTGACCGCACAGGGCCGGGTCGACCCAAACCAGAACACCGGCATCGTGATCCAGAAGTGCCGTATCGGGGCAACGAAGGACCTCGAGGCCGTGAAGGGGAGCTTCAAGACCTACCTTGGCCGGCCATGGAAGGAGTACTCGAGGACGGTGATAATGCAGACGAGCATAAGCGACGTGATTGATCCGGTGGGTTGGCACGAGTGGAATGGGAACTTTGCTTTGGACACTCTGTTCTATGGGGAATATCAGAATACTGGAGCTGGTGCTGGGACTGCAAATAGGGTTAAGTGGAAGGGGTTTAAGGTTATTACCAGTGCTTCGGAGGCTCAGAGTTTTACTGCTGGTAGCTTTATTGGTGGGTCTAGCTGGTTGGGGTCTACTGGGTTCCCCTTCTCTCTTGGTCTCTAG 1773 0.5494 MSKLKQMFAGISNSGNHKKNKKLFLALSSTLLLVAAVIGIVAGVNSRHKSSGGDNLNYSTHPSHAIVKSACSSTLYPELCFSAISSEPGFTKKVSSHRDVIELSLNITTRAVEHNFFTVEKLIATRKDSLTVREKTALHDCLETIDETLDELHTAVEDLKEYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHDGADKKVRGALEAGQVHVERMCSNALAMIKNMTDTDVANYEKKMGITKSRRLMAATAEDGGVQWPEWMSASDRRLLQASEVKPDAVVAADGSGDFKTVSAAVAAAPQKSSKRYVIKIKAGVYRENVEVPKKKTNIMFLGDGRANTIITGSRNVVDGSTTFHSATVAVVGERFLARDITFENTAGHAKHQAVALRVGADLSAFYNCDILAYQDTLYVHNNRQFFINCLVAGTVDFIFGNAAAVFQDCDIHARRPGSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKGSFKTYLGRPWKEYSRTVIMQTSISDVIDPVGWHEWNGNFALDTLFYGEYQNTGAGAGTANRVKWKGFKVITSASEAQSFTAGSFIGGSSWLGSTGFPFSLGL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1351 590 ProSitePatterns Pectinesterase signature 2. 423 432 IPR033131 -
Dere11g1351 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 228 IPR035513 -
Dere11g1351 590 Pfam Pectinesterase 279 575 IPR000070 GO:0030599|GO:0042545
Dere11g1351 590 CDD PMEI-like_3 69 228 - -
Dere11g1351 590 NCBIfam pectinesterase inhibitor domain 58 227 IPR006501 GO:0004857
Dere11g1351 590 Gene3D - 272 590 IPR012334 -
Dere11g1351 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 228 IPR035513 -
Dere11g1351 590 PANTHER PECTINESTERASE 32 580 - -
Dere11g1351 590 Pfam Plant invertase/pectin methylesterase inhibitor 66 223 IPR006501 GO:0004857
Dere11g1351 590 FunFam Pectinesterase 63 228 - -
Dere11g1351 590 SMART PMEI_2 62 223 IPR006501 GO:0004857
Dere11g1351 590 SUPERFAMILY Pectin lyase-like 276 589 IPR011050 -
Dere11g1351 590 FunFam Pectinesterase 273 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1351 Dere-ChrDere11 25327991 25332774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1351 4 590 Carbohydrate Esterase AT3G14310 71.048 0.0 830