Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1346 ATGGGCGACTTAGAAGGAACGAGTAACAGAATGGAAGACTCGCCGGCGATGGAAGTAACCGGCAAGATCATGGTGGGAGCTATAATACTCCTCTTCTTCGTGGTTGTGTTTGTCTGCTTCCTCCATCTCTACGCCAAATGGTTCTGGAGGCGAATCGAAGGAAGCTCCACCACTCCCCACATCCACAACCGCCGCAGCCGCCGCCGCCGCTTCGTCTTCGCTGCAGGACAAGACCCAGCGATATACGGCACCCATAGAAGTGGACTTGACCCGGAAGTCCTCAGATCCTTACCCGTATTGGTATACCAGCCAGAGGATTTCAAAGATGGTTTGGAATGTGCAGTCTGTCTCTGTGACCTTGTTCATGGGGAGAAAGCAAGGCTATTACCCAAATGCAATCACGGTTTTCACGTAGATTGCATAGATATGTGGTTCCAATCCCATTCTACTTGTCCCCTTTGTAGGAACCCAGTTGCTTCTGATCCCTTCACATCCCATTGTAGCTCAGGTGTTCGAGAAAATGTCTCTGATAACAGCAGTCAGTCATCAGACTCAGAAAGTTCAGATGCTATGAGTGAGATAGATTTAGATTCTCCACATTTTCCCACAAATGTGTTGATTTGGGGGAATCAGACCCAAGTAATTTCTATTGGTGAAGGTCCTGCTCTTCAAGCACCTTCTTCTTCATCAGCAGGTAGTAGTAGCAGCAGCAATAGTAACAATAGACGCCATGGAATGTTGGTGATTGATATACCTCAACAGATGAATCCGTCTTCTTTATCACCTTCTACTAGCAGGTTTGCTGAAGATGAGCTGAAGTCACCAGCGACATCTAGACTTAAGTCATTCACGAGGATGTTAAGCAGAAGGTTCAGTCCTCGTAGTCCTAGTTCTACTTCTATAGATGTGGAACAAGCAGGGAGAGGACAGAGCTAG 936 0.4722 MGDLEGTSNRMEDSPAMEVTGKIMVGAIILLFFVVVFVCFLHLYAKWFWRRIEGSSTTPHIHNRRSRRRRFVFAAGQDPAIYGTHRSGLDPEVLRSLPVLVYQPEDFKDGLECAVCLCDLVHGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASDPFTSHCSSGVRENVSDNSSQSSDSESSDAMSEIDLDSPHFPTNVLIWGNQTQVISIGEGPALQAPSSSSAGSSSSSNSNNRRHGMLVIDIPQQMNPSSLSPSTSRFAEDELKSPATSRLKSFTRMLSRRFSPRSPSSTSIDVEQAGRGQS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1346 311 MobiDBLite consensus disorder prediction 221 244 - -
Dere11g1346 311 CDD RING-H2_EL5-like 112 155 - -
Dere11g1346 311 Pfam Ring finger domain 112 155 IPR001841 -
Dere11g1346 311 FunFam RING-H2 finger protein ATL3 81 160 - -
Dere11g1346 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 160 IPR013083 -
Dere11g1346 311 MobiDBLite consensus disorder prediction 221 311 - -
Dere11g1346 311 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Dere11g1346 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 278 - -
Dere11g1346 311 MobiDBLite consensus disorder prediction 165 189 - -
Dere11g1346 311 SUPERFAMILY RING/U-box 93 161 - -
Dere11g1346 311 MobiDBLite consensus disorder prediction 165 195 - -
Dere11g1346 311 SMART ring_2 113 154 IPR001841 -
Dere11g1346 311 MobiDBLite consensus disorder prediction 252 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1346 Dere-ChrDere11 25280542 25281477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1346 18 290 C3H Transcription Factor Family AT1G53820 43.151 1.87e-66 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1346 11 25280542 25281477 Dere11g1346 11 25280542 25281477 ECH