Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1338 ATGTTGGAGGATCGAAGGCTGGTGGTGGTGTTCATCAGCATCTGCATTCTGGGTTTGATGCCCATTGCCATCAATAGTCTGACGGATCCAAATGATGCTGCTGCTCTAAGGGTTATGTTTAGCAGTATGAATTCGCCATCCCTGCTAGGTTGGTCAGCAAATGGTGATGATCCGTGTGGACAGTACTGGAAAGGCATTACTTGTTCAAACAACCGAGTCACGGAAATTAAGTTACCTGGCCTTGGACTAACTGGATCCTTGGGCTACCAGTTACAAACCTTGACAGCTGTGATCGTCCTAGACATGAGTAACAATAATCTTGGAGGCACTATACCATACCAACTGCCTCCCAATGTGCAGCGGTTGAACCTTGCTAATAATAACTTCACTGGGGGAGTCGCTTACTCTATTTCTGATATGACTTCACTTACTTACCTGAATCTTGGTCACAATCAACTCCAGGATGGACTAAGTGTCAACTTTGAGAAGCTTTCTTCACTCTCCACATTGGATCTCTCATTCAATACTCTGTCAGGTGACCTTCCTCAGAGTTTCACCTCACTTTCAAGCATCACCACCATGTATCTGCAAAACAACCAGTTTACAGGCACGATTGATGTCCTTGCCAATCTTCCTCTTGAAATTCTGAATGTGGAAAACAATCATTTTACTGGCTGGGTACCAGAACAGTTGAAAAACATAAACCTACATAAGGATAATAATGCATGGAGCTCAGGCCCTGCACCCCCACCTCCTCCTGGGACACCTCCCGTGACTAAAAGCACGCAAAGTCACAAAACTGGTGGCAGTGGAAGAAACACCCCGTCAGATGCTGATACTAGTGAGGGAGGCAAAAAATCTAGTATAGGTGGTGGTGGCATTGCTGGAATAGTGATCTCCATCTTTGTTGTTGGAGCAATAGTTGCATTCTTCCTGATGAAGAGAAGGTTCAGGAAGCCATCTTCAGATTTAGAAAATGTCGACAATCAGCCCTTTGCTCCTCTTACTTCAAATGAAGTGCATGAAATGAAGTCTGTGCAAACTTCCTCAGTAGCTGACATAAAGACGTTTGATACTTCTGCCTCATTCAATCTTAAACCTCCTCCCATTGATCGTCACAAATCATTCGATGAAGATGAAATTTCAAAGAAGCCCATTATTGTAAAGAAAACTGTAACAGCTCCTGAAAATGTAAAATTATATTCTATAGCAGACCTGCAGATTGCTACTGGCAGCTTCAGCATGGATCACCTTCTTGGCGAGGGATCTTTTGGACGTGTTTACCGTGCTCAATTTGATGATGGAGAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCACAATGATATGTCTGAAGATTTCACAGAAGTAGTTTCAAACATATCCCAATTGCATCATCCAAATGGAACAGAACTCATTGGTTATTGTTCAGAGCATGGACAACATCTCCTAGTCTATGAGTTTCATAAGAATGGGTCACTGCATGACTTCCTTCACTTGCCAGATGAGTATAGCAAACCATTGATATGGAATTCCCGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTCCATGAAGTTTGTTCACCGTCAGTTGTTCATAAAAATATTAAATCAACCAACATATTGCTTGATACGGAGCTTAATCCTCATCTTTCAGACAGTGGATTGGCTAGTTATATTCCAAATGCAGACCAGGTATTAAACCGTAATGCAGGATCTGGATATGATGCACCTGAAGTTGGCTTGTCTGGTCAGTATACTCTGAAGAGTGACGTCTACAGCTTTGGAGTTGTCATGTTGGAGCTTCTTAGTGGACGTAAACCATTTGATAGCTCAAGGCCAAGATCTGAGCAGTCTCTGGTTCGATGGGCAACACCGCAACTTCATGATATTGATGCATTGGCTAAAATGGTTGACCCTGCACTGGAAGGGCTATACCCTGTAAAGTCTCTTTCTCGGTTTGCTGATGTAATTGCTCTTTGCGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCATTGGTCCGACTGGTTCAGCGTGCTAACATGAGCAAGCGAACATTTGGAACTGACCAAGGAGGATCCCAACGAGGAGATCGCCAAGAGGCACAGGACATGTAA 2154 0.4378 MLEDRRLVVVFISICILGLMPIAINSLTDPNDAAALRVMFSSMNSPSLLGWSANGDDPCGQYWKGITCSNNRVTEIKLPGLGLTGSLGYQLQTLTAVIVLDMSNNNLGGTIPYQLPPNVQRLNLANNNFTGGVAYSISDMTSLTYLNLGHNQLQDGLSVNFEKLSSLSTLDLSFNTLSGDLPQSFTSLSSITTMYLQNNQFTGTIDVLANLPLEILNVENNHFTGWVPEQLKNINLHKDNNAWSSGPAPPPPPGTPPVTKSTQSHKTGGSGRNTPSDADTSEGGKKSSIGGGGIAGIVISIFVVGAIVAFFLMKRRFRKPSSDLENVDNQPFAPLTSNEVHEMKSVQTSSVADIKTFDTSASFNLKPPPIDRHKSFDEDEISKKPIIVKKTVTAPENVKLYSIADLQIATGSFSMDHLLGEGSFGRVYRAQFDDGEVLAVKKIDSSVLHNDMSEDFTEVVSNISQLHHPNGTELIGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSTNILLDTELNPHLSDSGLASYIPNADQVLNRNAGSGYDAPEVGLSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRANMSKRTFGTDQGGSQRGDRQEAQDM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1338 717 Pfam Protein tyrosine and serine/threonine kinase 415 685 IPR001245 GO:0004672|GO:0006468
Dere11g1338 717 Gene3D Ribonuclease Inhibitor 180 245 IPR032675 -
Dere11g1338 717 SUPERFAMILY L domain-like 28 233 - -
Dere11g1338 717 SUPERFAMILY Protein kinase-like (PK-like) 395 685 IPR011009 -
Dere11g1338 717 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Dere11g1338 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 377 490 - -
Dere11g1338 717 MobiDBLite consensus disorder prediction 259 283 - -
Dere11g1338 717 Gene3D Phosphorylase Kinase; domain 1 375 490 - -
Dere11g1338 717 Gene3D Ribonuclease Inhibitor 31 179 IPR032675 -
Dere11g1338 717 ProSiteProfiles Protein kinase domain profile. 413 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere11g1338 717 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Dere11g1338 717 CDD STKc_IRAK 419 688 - -
Dere11g1338 717 MobiDBLite consensus disorder prediction 696 717 - -
Dere11g1338 717 PANTHER LEUCINE RICH REPEAT KINASE 2 71 692 - -
Dere11g1338 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 699 - -
Dere11g1338 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 254 - -
Dere11g1338 717 MobiDBLite consensus disorder prediction 238 289 - -
Dere11g1338 717 Gene3D Transferase(Phosphotransferase) domain 1 492 707 - -
Dere11g1338 717 ProSitePatterns Protein kinases ATP-binding region signature. 419 442 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1338 Dere-ChrDere11 25233444 25240546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1338 8 709 Strubbelig Receptor Gene Family AT1G53730 66.150 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Dere11g1338 PK_Tyr_Ser-Thr 2e-40 CL0016