Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1330 ATGGCGAACCCAGCTCCTGTGCTGGAATTTATGCCTGTGGGGTTCAGATTCGATCCAAAGGATGACGAGCTCGTGGATCACTACCTGAAGAACAAATTGATCGGTGATGATTTCATTGTCCAGATTATCCCTGAGATTGACATTTGCAAGCACGAGCCGTGGGATATACCTGCGTTCTCGGTGATCAAGTCGGATGATCCAGAATGGTTTTTCTTCAGTCGTCGCGATTACAAGTACTCTAACAGTACTCGGTCGAACAGGTCAACAGAGTGTGGCTTCTGGAAACCCACTGGTAGAGACAGGATGATCAAGGTTCGGGGCACCGGTGCCCTCATTGGGACCAAAAAGACTCTGATTTTCTATGAAGGTCGTGTTCCTAATAGCGTCAAGACCAATTGGGTTATTCATGAATACCATGCTGTTACATTTCCTCTTGAACAGAGGACCTTTGTTCTATGCAAGTTAATGAAGAAACCTGAGAAGAAAGCAGAAGAGAGAACTGTTGAATTAGTCTGTGATGAAGGGGAGCCAAGTAGCTATCCGGCTTCGGACTATGAATATCTAATAAGTTCAGATATAATTCCAGATGTACATTCTTTGCCTGCAAGAAATCTAGATTTAATCTTTGATACACTCCAGCCAGATATCTCTGACATGAACTTCGCACGGCAGTCTCCAATTGCCATTGAGCTGGAACCATCTTTCCAATTCTCCCCATTACCCAATTCCTATGTTGGAAACGATAACAACAGTGGACACTTTCCTTTGCAAACTACTGAAGAGGAAGACGATGTGTTTGTGGATTCAATTTGGGCTGATGAGGATGTCTTCTTCAGTCAGGAAACGAAACATGCTTTTGTCAATGACTCCAACCCCTCGGAGTCCTTGAGAATGGTGTACTATGAAAGCAGTGACACAGACGCTGAAGTTGTTTCTGCACGGTACGGAAATATTCTAGATACTTCAACAGTATCTAATAAAAATGCTGGTTCAAGGGAATTCCAGCTTATGAAAATGGTTAATTCCTCACATGCTGCTGCACATGTTGGCACTTCTCAACCTCCTTCTTACCATGAAGCAAGCAAAGAGAAGAACGGCAGATCCTTCCAATATGATTTGGACACTTCCTCTGGTGACTCAACCCCTGCTACACCATTCAAGATCAACTGTGTTAAAATTTCTAGCTCTCCTTCCACTCTAAGGACATGCAGAACTCAATATCAACCAAGATCAGCCAACTCTGTGTCCCAGAGAACTGTGGGACGAAGATCTCAAGCACAGAGGAAGGTTTCAACCAAAGAAGCGTACCATCATGAGGCTCAGAAGGAAACACTTGTGGAATCAAACAGTAATCAGAGAAAAGCCCAGGTCTCCATTTCAAAAAATACTGTGGAAGCTCCAAGCAAGCAATCCTCTGATGTCAATGGAAAGGGTTCTTTCATCCACTTGGAGACACCTTCATCAAGCCAAAACCTCAGTCCACCATCGGCATATCTTGTAAATGTAGTAATAGGGCTTTTTCTGTTTATAGTCATTGTTTGGGAAATTTTATCATGTGGGAGGTTCTGA 1569 0.4347 MANPAPVLEFMPVGFRFDPKDDELVDHYLKNKLIGDDFIVQIIPEIDICKHEPWDIPAFSVIKSDDPEWFFFSRRDYKYSNSTRSNRSTECGFWKPTGRDRMIKVRGTGALIGTKKTLIFYEGRVPNSVKTNWVIHEYHAVTFPLEQRTFVLCKLMKKPEKKAEERTVELVCDEGEPSSYPASDYEYLISSDIIPDVHSLPARNLDLIFDTLQPDISDMNFARQSPIAIELEPSFQFSPLPNSYVGNDNNSGHFPLQTTEEEDDVFVDSIWADEDVFFSQETKHAFVNDSNPSESLRMVYYESSDTDAEVVSARYGNILDTSTVSNKNAGSREFQLMKMVNSSHAAAHVGTSQPPSYHEASKEKNGRSFQYDLDTSSGDSTPATPFKINCVKISSSPSTLRTCRTQYQPRSANSVSQRTVGRRSQAQRKVSTKEAYHHEAQKETLVESNSNQRKAQVSISKNTVEAPSKQSSDVNGKGSFIHLETPSSSQNLSPPSAYLVNVVIGLFLFIVIVWEILSCGRF 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1330 522 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Dere11g1330 522 MobiDBLite consensus disorder prediction 345 359 - -
Dere11g1330 522 MobiDBLite consensus disorder prediction 445 480 - -
Dere11g1330 522 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Dere11g1330 522 SUPERFAMILY NAC domain 7 158 IPR036093 GO:0003677|GO:0006355
Dere11g1330 522 MobiDBLite consensus disorder prediction 370 384 - -
Dere11g1330 522 MobiDBLite consensus disorder prediction 399 426 - -
Dere11g1330 522 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 384 - -
Dere11g1330 522 MobiDBLite consensus disorder prediction 399 480 - -
Dere11g1330 522 MobiDBLite consensus disorder prediction 345 384 - -
Dere11g1330 522 MobiDBLite consensus disorder prediction 427 444 - -
Dere11g1330 522 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1330 Dere-ChrDere11 25075564 25078400 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1330 8 162 NAC Transcription Factor Family AT4G35580 54.375 4.60e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1330 NAM 9.8e-32 No_clan