Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1327 ATGGCGGTAGGATACAGATTCTGTCCGACGGATGAAGAGCTTGTGGGTCACTATTTGAAGAACAAGTTGCTTGGTGATGGTTCCGTCACCCAGATTATTGCTGAGGTTGATGTTTGCAAGATGGAGCCTTGGGACTTACCAGCTTTTTCCAAGGTGAAGTCAGATGATCCAGAATGGTTCTTCTTCAGTCCTCGAGATTTAAAGTACACTAACAGCAATCGGTCTAACAGAGCAACCATGTGTGGGTATTGGAAGGCCACTGGTAAGCATCGAAACATCAAGACCAGAGGCACCAACAATGTCATCGGGACAAAGAAGACTTTGGTTTTCTATAAAGGTCGTGTTACTCACGGTGTCAAGACCAATTGGGTTATTCATGAATATCATGCACTTACTGTTCCTGATTTTCAGAGAACCTATGTTTTATGCCGTTTAATAAAGAAAACAGAAAAAATAGCAAAAGGAAAAAATAGATTGATCAATGATCAACCAAGTTGCGATATGGCTTCTGACTGTGAAAATCAAGCATCATCGAATAGAATTCCAGATGTATATTCTTTACCTGAAGTAGATATAGATTCAATTCTTCAGGTAGTAGATTATGACCTTCCCTCCATACGGCAAGAACCACCTTCCCAATATCCATCAGTTTCCGATGCTTGTTATGGAAATGAAAACAGTAGTAGTAAGTTTGTTATTGAAACTACTGAAGTGGAAGACAACTTTGATGAGTTCTTGAATTCAATTCTCATCAATGAAGAAAGATGGCATGCTTTTGTCAGTGATTTTGCCCCATCAGAGTCATTGAATGGAACGGACTCCGGATTAGTCTCAGAATGGGTAAAAGTTTGTCCTCCTAATAATATTGGAGAGCATGTCTACATTAGTTCATAA 894 0.396 MAVGYRFCPTDEELVGHYLKNKLLGDGSVTQIIAEVDVCKMEPWDLPAFSKVKSDDPEWFFFSPRDLKYTNSNRSNRATMCGYWKATGKHRNIKTRGTNNVIGTKKTLVFYKGRVTHGVKTNWVIHEYHALTVPDFQRTYVLCRLIKKTEKIAKGKNRLINDQPSCDMASDCENQASSNRIPDVYSLPEVDIDSILQVVDYDLPSIRQEPPSQYPSVSDACYGNENSSSKFVIETTEVEDNFDEFLNSILINEERWHAFVSDFAPSESLNGTDSGLVSEWVKVCPPNNIGEHVYISS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1327 297 ProSiteProfiles NAC domain profile. 1 148 IPR003441 GO:0003677|GO:0006355
Dere11g1327 297 Pfam No apical meristem (NAM) protein 3 129 IPR003441 GO:0003677|GO:0006355
Dere11g1327 297 Gene3D NAC domain 10 154 IPR036093 GO:0003677|GO:0006355
Dere11g1327 297 SUPERFAMILY NAC domain 2 148 IPR036093 GO:0003677|GO:0006355
Dere11g1327 297 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1327 Dere-ChrDere11 25058795 25061025 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1327 1 186 NAC Transcription Factor Family AT4G35580 48.515 5.50e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1327 NAM 6.2e-35 No_clan