Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1324 ATGGCGAACCCAGCTCCTGTGCTGGAATTTATGCCTCTGGGGTTCAGATTCCGTCCAACCGATGAAGAGCTCGTGGGTCACTACCTGAAGTACAAATTGATGGGTGATGATTTCATTGTCCAGATTATCCCTGAGATTGACGTTTGCAAGCACGAGCCGTGGGATATACCTGGACTGCAAGTTCAAAGTTTATATGTTAGACATATAAAGCGCAAGAATTGGTGGGCATGTAGAACTTTTGGGTTGAAGTGGTTCTTAACGTTATCGATACTTAATTTATTGACATTGTGTAGGACCTTTGTTCTATGCCGGTTAATGAAGAAAGCAGAAGGGAGAACTGGTGAATTAGTCTGTGATGAAAGGGAGCCAAGTAGCTATCCGGCTTCTGACTATGAAAATCCAGCAAGTTCAGATATAATTCCAAATGTACATTCTTTGCCTCTAGATTCAATCTTTCAGACAGTCCAGCCAGATAACTCTGACATGAACTTCGCACGGCAGTCTCCAATTGCCATTGAGCTGGAATTCTCCCCATTACCCAATTCCTATGTTGGAAACGATAACAACAGTGGACACTTTCCTTTGCAAACTACTGAAGAGGAAGACAATGCGTTTGTGGATTCAATTTGGGCTGATGAGGATGTCTTCTTCAGTGAGGAAACGAAACATGCTTTTATCAATGACTCCAACCCCTCAGAGTCCTTGAGAATGGTTTACTATGGAAGCAGTGACACAGATGCTGAAGTTGTTTCTGCACGGTACGGAAATATTCTAGATACTTCAACAGTATCTTATAAAAATGATGGTTCAAGGGAATACCGGCTTATGAAAATGGTTAATTCCTCACATGGTGGTGCACATGTTGGCACTTCTCAACCTCCTTCTTACCAAGAAGCAAGCAGAGAGAAAAAGGGCAGATCCTTCCAAGATGATTTGGACACTTCCTCTGGTGACTCAACCCCTGCTACACCATTCAAGATCAACTGTGTTAAAATTTCTAGCTCTTCTTCCACTCTAAGGACATGCAGAACTCAATATCAACCAAGATCAGCCAACTCTGTGTCCCAGAGAGCTGGGGGACGAAGATCTCAAGCACAGAGGAAGGTTTCAACCAAAGCAGCGTACCATCATGAGGCTCAGAAGGAAGCACTTGTGGAATTAAACAGCAATCAGAGAAAAGCCCAGGTTTCCATTTCAAAAAATACCGTGGAAGCTCCAAGCAAGCAATCCTCTGATGTCAATGGAAAGGGTTCTTTCATCCACTTGGAGACACCTTCATCAAGCCAAAACCTCAGTCCACCATCGGCCATGCTCATGCCTCTGATCTGCATTAACATGATGGAGAAGGGAAAGCCATTTATATTTTTGAAAGTGGGCGTTCGTGTTCCCTGCAAGAAAATGCCTAGTCTCTCTTTGCAAAAATGTCTGCAACCGTGCCTTCCTTTCTTGGCTTTCTTTCTTCATCTTCCTTCCCTTTTCCACTTACTCTCTTTGCAGCATCTGAAAGCTACACTTCTATCCTTTCTCATACATGTATGTCTTTCCTGA 1548 0.4335 MANPAPVLEFMPLGFRFRPTDEELVGHYLKYKLMGDDFIVQIIPEIDVCKHEPWDIPGLQVQSLYVRHIKRKNWWACRTFGLKWFLTLSILNLLTLCRTFVLCRLMKKAEGRTGELVCDEREPSSYPASDYENPASSDIIPNVHSLPLDSIFQTVQPDNSDMNFARQSPIAIELEFSPLPNSYVGNDNNSGHFPLQTTEEEDNAFVDSIWADEDVFFSEETKHAFINDSNPSESLRMVYYGSSDTDAEVVSARYGNILDTSTVSYKNDGSREYRLMKMVNSSHGGAHVGTSQPPSYQEASREKKGRSFQDDLDTSSGDSTPATPFKINCVKISSSSSTLRTCRTQYQPRSANSVSQRAGGRRSQAQRKVSTKAAYHHEAQKEALVELNSNQRKAQVSISKNTVEAPSKQSSDVNGKGSFIHLETPSSSQNLSPPSAMLMPLICINMMEKGKPFIFLKVGVRVPCKKMPSLSLQKCLQPCLPFLAFFLHLPSLFHLLSLQHLKATLLSFLIHVCLS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1324 515 ProSiteProfiles NAC domain profile. 11 154 IPR003441 GO:0003677|GO:0006355
Dere11g1324 515 MobiDBLite consensus disorder prediction 284 298 - -
Dere11g1324 515 MobiDBLite consensus disorder prediction 338 367 - -
Dere11g1324 515 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 70 - -
Dere11g1324 515 Gene3D NAC domain 20 79 IPR036093 GO:0003677|GO:0006355
Dere11g1324 515 Pfam No apical meristem (NAM) protein 12 60 IPR003441 GO:0003677|GO:0006355
Dere11g1324 515 SUPERFAMILY NAC domain 7 62 IPR036093 GO:0003677|GO:0006355
Dere11g1324 515 MobiDBLite consensus disorder prediction 282 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1324 Dere-ChrDere11 25005927 25013755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1324 8 61 NAC Transcription Factor Family AT1G33060 68.519 4.30e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1324 NAM 1.6e-11 No_clan