LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g1323	ATGCCGGTAGGATTCAGATTCCATCCAACGGATGAAGAGCTTGTGGGTCACTATTTGAAGAATAAGTTGCTTGGTGATGGTTCCCTCACCCAGATTATTGCTGAGGTTGATGTTTGCACGGTGGAGCCTTGGGACTTACCAGCTTTTTCCAAAGCAAAGTCAGATGACCCAGAATGGCCACTGGTATATTCTTTACCTGAAGTAGATTTGGACTCAATTTTTCAGGTAGTAGATTATGACTTTCCTTCCATTAGGCAAGAGCCACCTTCCCAATATACATCAGTTTCTTATGCTTGTTATGGAAATGAAAACAATAGTGATAAGCTTGTTATTGAAACTACTGAAGTGGAAGATAACATTGATGAGTTCTTGAATTCAATTCTCATCAATGAAGATGTTTCTTTCAATGAAGAAAGATGGCATGCTTTTGTCGGTGACTTTGCCCCATTAGAGTCATTGAATGAAATGGAATCTGGATTAGTCTCAGAATGGGTAAAGAATATGGTTAAAACATCCCATGGTTCTGTACAAGCCAGTAATCCTGTGTTGTCCTTACATGAAGTAAACCAAGTGGAAAAAGGGAGTATTCTTCAGGATAATTTCCGGGGGTTGGACACTTCTTCCAGTGATGACCAAAAGTATAACAGAAATGGCTATGTGGTCTAA	666	0.3964	MPVGFRFHPTDEELVGHYLKNKLLGDGSLTQIIAEVDVCTVEPWDLPAFSKAKSDDPEWPLVYSLPEVDLDSIFQVVDYDFPSIRQEPPSQYTSVSYACYGNENNSDKLVIETTEVEDNIDEFLNSILINEDVSFNEERWHAFVGDFAPLESLNEMESGLVSEWVKNMVKTSHGSVQASNPVLSLHEVNQVEKGSILQDNFRGLDTSSSDDQKYNRNGYVV	221

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g1323	221	Gene3D	NAC domain	10	66	IPR036093	GO:0003677\|GO:0006355
	Dere11g1323	221	ProSiteProfiles	NAC domain profile.	1	172	IPR003441	GO:0003677\|GO:0006355
	Dere11g1323	221	Pfam	No apical meristem (NAM) protein	2	59	IPR003441	GO:0003677\|GO:0006355
	Dere11g1323	221	MobiDBLite	consensus disorder prediction	202	221	-	-
	Dere11g1323	221	SUPERFAMILY	NAC domain	1	59	IPR036093	GO:0003677\|GO:0006355
	Dere11g1323	221	PANTHER	PROTEIN CUP-SHAPED COTYLEDON 2-RELATED	1	59	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g1323	Dere-ChrDere11	25002570	25005384	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g1323	1	59	NAC Transcription Factor Family	AT4G35580	61.017	1.47e-19	84.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Dere11g1323		NAM	1.5e-14	No_clan