Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1320 ATGCCGGTAGGATTCAGATTCCATCCAACGGATGAAGAGTTTGTGGGTCACTATTTGAAGAACGAGTTGCTTGGTGATCGTTCCCTCACCCAGATTATTGCTGAGGTTGATGTTTGCAAGATGGAGCCTTGGGAATTACCAGCTTTTTCCAAAGTAAAATCAGATGACCCAGAATGGTTCTTCTTCAGTCCTCGAGATTTAAAGTACTCAAACAGCAAGCGGTCTAACAGGGCTACTGTGGGTGGGTATTGGAAGGTCACTGGTAAGGAACGTAGGATCAAGACCAGAGGCACCAACAACGTTATTGGGATAAAGAAGACTTTGGTTTTTTATAAAGATCGTGTTCCTCATGGTATCAATACCAATTGGGTTATTCATGAATATCATGCAATCACCATTCCTGATTCTCAGAGAACCTTTGTCTTATGTCACTTAATGGAGAATACAGGAAAGAAAGCAGGAGGAAAAAATGCATTGATCAATAATCAATTAGGTTGCCACATGGCTTCTGACTGTGAAAATCAAGAATTATCAGATAAAATTTCATGTGAATATTCTTTACTTGAAGTACGTATGAATTCAATTCTTCAGACAGCAGAATATAACTCTCCCTCCATACAACAAGAACCACCTTTCCAATATGCATCAGTTACTGATGCCTATTATGGGAACGAAAATAGTAGTAATAAGTTTCTTATTGAAACTAGTGAAGTGGAGGACAACATTGATGAGTTTTGGAATTCAATTCCCATCAATGAAGATGTTTCCTTCAATGAAGAAAGATGGCATGCTTCTATTGGTGACTTCGACGCATTAGAGTCATTAAGAGAAACAGACTTTGAATCAGTTCCAGCATGGTTAAAATTATGTTCTCCCAATGATATTGGAGAGCATGGCTACACTAGTTCATAA 912 0.386 MPVGFRFHPTDEEFVGHYLKNELLGDRSLTQIIAEVDVCKMEPWELPAFSKVKSDDPEWFFFSPRDLKYSNSKRSNRATVGGYWKVTGKERRIKTRGTNNVIGIKKTLVFYKDRVPHGINTNWVIHEYHAITIPDSQRTFVLCHLMENTGKKAGGKNALINNQLGCHMASDCENQELSDKISCEYSLLEVRMNSILQTAEYNSPSIQQEPPFQYASVTDAYYGNENSSNKFLIETSEVEDNIDEFWNSIPINEDVSFNEERWHASIGDFDALESLRETDFESVPAWLKLCSPNDIGEHGYTSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1320 303 ProSiteProfiles NAC domain profile. 1 148 IPR003441 GO:0003677|GO:0006355
Dere11g1320 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 205 - -
Dere11g1320 303 SUPERFAMILY NAC domain 1 146 IPR036093 GO:0003677|GO:0006355
Dere11g1320 303 Pfam No apical meristem (NAM) protein 2 129 IPR003441 GO:0003677|GO:0006355
Dere11g1320 303 Gene3D NAC domain 10 152 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1320 Dere-ChrDere11 24973686 24975913 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1320 1 155 NAC Transcription Factor Family AT4G35580 53.416 1.01e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1320 NAM 6.6e-34 No_clan