Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1317 ATGCCTCTGGGGTTCAGATTCCATCCAACCGATGAAGAGCTCGTGGGTCACTACCTGAAGAACAAATTGATGGGTGATGATTTCATTGTCCAGATTATTCCTGAGATTGTCGTTTGCAAGCACAAGCCGTGGGATATACCTGCATTCTCCGTGATCAAGTCGGATGATCCAGAATGGTTTTTCTTCAGTCCTCGCGATTACAAGTACTCTAACAGTACTCGGTCGAACAGGTTAACAGAGCGTGGCTTCTGGAAAGCCACTGGTGTAGACAGGAAGATCAAGGTTCGAGGCACCGATGCTGTCATTGGGACTAAAAAGACTTTGGTTTTTTATAAAGGTCGTGTTACTCGTGGCGTCAAGATTAATTGGATTATTCATGAATACCATGCTGTTACATTTCCTCCTGAACTGAGGACCTTTGTTCTATGCCGGTTAATGGACAAAGCAGAAGGGAGAACTGGTGAATTAGTCTGTGATGAAAGGGAGCCAAGTAGCTATCCGGCTTCTGACTATGAAAATCCAGCAAGTTCAGATATAATTCCAAATGTACATTCTTTGCCTCTAGATTCAATCTTTCGGACAGTCCAGCCAGATAACTCTGACATGAACTTCGCACGGCAGTCTCCAATTGCCATTGAGCAGGAATTCTCCCCATTACCCAATTCCCATGTTGGAAACGATAACAACAGTGGACACTTTCCTTTGCAAACTACTGAAGAGGAAGACAATGCGTTTGTGGATTCAATTTGGGCTGATTTGGATGTCTTCTTCAGTGAGGAAACAAAACATGCTTTTGTCAATGACTCCAACCCCTCGGAGTCCTTGAGAATGGTGTACTATGGAAGCAGTGACACAGACGATGAAGTTCTTTCTGCACGGGTAAAGATATGTTCTCCTAATTATGTTGGAGCCTGCACTTCTCAACCTCCTTCTTACCAAGAAGCATGCAGAGAGAAAAAGGGCAGATCCTTCCAAGATGATTTGGACACTTCCTCTGAACTCAATATCAACCAAGATCGGCCAACTCTGTCCCAGGGAGCTGGGGGACGAAGATCTCAAGCACAGAGGAAGTTTTCAACCAAAGCAGCGTACCATCATGAGGCTCAGAAGGAAGCACTTGTGGAATCAAACAGCAATCAGAGAAAAGCCCAGGTTTCCATTTCAAAAAATACTGTGGAAGCTCCAAGCAAGCAATCCTATGATGTCAATGGAAGGGGTTCTTTCATCCACTTGGTGACACCTTCATCAAGCCAAAACCTCAGTCCACCATCGGTGGAGAATGCTGTATTCTTCCCCTGTGAAGTAGCCAAATGGAGAGAGCTTTTTGGCGTTGTTTTATTGGGTGGGTGGCCTTTGTCTGGTTCTGCTCTTCGATGGATCGGAAGGGAGGATCCAACGACGGATCTTGCCGAGGATGCCTCCGTCTTTAGTGTTTTCTTCAGTCTTCGGGATTTCAAGACAGAATTGGTACTGAAATCCTCTTTGGAGGAGTTTGGATTACCGGAGAGTTTTAGTCTTGAAATTTCTGCCTTCTCTGCTTCAGTGATCTTATGCAGTGTTGAGGGGTTCTTTCATCTGCTTAGAGACACCTTCGCTGAGCCAAATTCCAAGTCCCAAAGGAGGAGGCTAATGATGAAGTTTCGATGGCCAGGGATAGTCATTAATGCTGCAGTCACTCCTCATTGCCTTAACAGTCAGCTGAAGCAAGCTGTGAACAGGTTCAATTCACTCTCAGTATGGGTGTCAATTTGCCTCGATATTGTTCTCAAGTTGAATCAAATGTATTAG 1788 0.4497 MPLGFRFHPTDEELVGHYLKNKLMGDDFIVQIIPEIVVCKHKPWDIPAFSVIKSDDPEWFFFSPRDYKYSNSTRSNRLTERGFWKATGVDRKIKVRGTDAVIGTKKTLVFYKGRVTRGVKINWIIHEYHAVTFPPELRTFVLCRLMDKAEGRTGELVCDEREPSSYPASDYENPASSDIIPNVHSLPLDSIFRTVQPDNSDMNFARQSPIAIEQEFSPLPNSHVGNDNNSGHFPLQTTEEEDNAFVDSIWADLDVFFSEETKHAFVNDSNPSESLRMVYYGSSDTDDEVLSARVKICSPNYVGACTSQPPSYQEACREKKGRSFQDDLDTSSELNINQDRPTLSQGAGGRRSQAQRKFSTKAAYHHEAQKEALVESNSNQRKAQVSISKNTVEAPSKQSYDVNGRGSFIHLVTPSSSQNLSPPSVENAVFFPCEVAKWRELFGVVLLGGWPLSGSALRWIGREDPTTDLAEDASVFSVFFSLRDFKTELVLKSSLEEFGLPESFSLEISAFSASVILCSVEGFFHLLRDTFAEPNSKSQRRRLMMKFRWPGIVINAAVTPHCLNSQLKQAVNRFNSLSVWVSICLDIVLKLNQMY 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1317 595 Gene3D NAC domain 10 151 IPR036093 GO:0003677|GO:0006355
Dere11g1317 595 SUPERFAMILY NAC domain 1 146 IPR036093 GO:0003677|GO:0006355
Dere11g1317 595 ProSiteProfiles NAC domain profile. 1 148 IPR003441 GO:0003677|GO:0006355
Dere11g1317 595 MobiDBLite consensus disorder prediction 373 399 - -
Dere11g1317 595 Pfam No apical meristem (NAM) protein 2 129 IPR003441 GO:0003677|GO:0006355
Dere11g1317 595 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 318 - -
Dere11g1317 595 MobiDBLite consensus disorder prediction 317 399 - -
Dere11g1317 595 MobiDBLite consensus disorder prediction 328 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1317 Dere-ChrDere11 24930965 24946112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1317 1 180 NAC Transcription Factor Family AT4G35580 52.406 6.27e-56 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1317 NAM 1.6e-32 No_clan