Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1313 ATGCAGGTAGGATTCAGATTCCATCCAACGGGTGAAGAGCTTGTGGGTCACTATTTGAAGAACAAGTTGCTTGGTGATCGTTCCCTCACCCAGACTATTGCTGAGGTTGATGTTTGCAAGATGGAGCCTTGGGAATTACCAGCTTTTTCCAAAGTAAAGTCAGATGACCCAGAATGGTTCTTCTTCAGTCCTCGAGATTTAAAGTACTCAAACAGCAAGCGGTCTAACAGGGCTACTGTGGGTGGGTATTGGAAGGTCACTGGTAAGGAACGTAGGATCAAGACCAGAGGCACCAACAATGTTATTGGGATAAAGAAGACTTTGGTTTTCTATAAAGGTCGTGTTCCTCACGGTATCAAGACCAATTGGGTTATTCATGAATATCATGCAATCACCATTCCGGATTCTCAGAGAACCTTTGTCTTATGTCACTTAATGGAGAATACTGGAAAGAAAGCAGGAGGAAAAAATGCATTGATCAATAATCAATTAGGTTACCACATGGCTTCTAACTGTGAAAATCCACAATCATCGGATAAAATTTCATGTGAATATTCTTCACCTGAATTACTTATGAATCCAATTCTTCAGACAGCAGAATATGACTCTTCCTCCATACAACAAGAATCACCTTTCCAATATGCATCAGTTACTGATGCCTATTATGGGAACGAAAATAGTAGTAATAAGTTTCTTATTGAAACTAGTGAAGTGGAGGATAACATTGATGAGTTTTGGAATTCAATTCCCATCAATGAAGATGTTTCCTTCAATGAACAAAGATGGCATGCTTCTATTGATGACTTCGACCCATTAGAGTCATTAAGAGGAATAGACTTTGAATTAGTTTCAGCATGGTTAAAGTTATGTTCTCCGAATGATATTGGAGAGCATAGCTACACTAGTTCATAA 912 0.3893 MQVGFRFHPTGEELVGHYLKNKLLGDRSLTQTIAEVDVCKMEPWELPAFSKVKSDDPEWFFFSPRDLKYSNSKRSNRATVGGYWKVTGKERRIKTRGTNNVIGIKKTLVFYKGRVPHGIKTNWVIHEYHAITIPDSQRTFVLCHLMENTGKKAGGKNALINNQLGYHMASNCENPQSSDKISCEYSSPELLMNPILQTAEYDSSSIQQESPFQYASVTDAYYGNENSSNKFLIETSEVEDNIDEFWNSIPINEDVSFNEQRWHASIDDFDPLESLRGIDFELVSAWLKLCSPNDIGEHSYTSS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1313 303 SUPERFAMILY NAC domain 3 146 IPR036093 GO:0003677|GO:0006355
Dere11g1313 303 Gene3D NAC domain 10 153 IPR036093 GO:0003677|GO:0006355
Dere11g1313 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 209 - -
Dere11g1313 303 Pfam No apical meristem (NAM) protein 3 129 IPR003441 GO:0003677|GO:0006355
Dere11g1313 303 ProSiteProfiles NAC domain profile. 1 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1313 Dere-ChrDere11 24867699 24869925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1313 1 194 NAC Transcription Factor Family AT4G35580 48.020 8.76e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere11g1313 NAM 2.4e-34 No_clan