Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1304 ATGACCCTGACTTCTATAGGAACCTTGGTTGAAGGTGAGGGCATGATATTCTTCCAAGAGGACAAATTGAAAAAGCTCGCACATGAATACCCTATCCAGGACAGGAGTAGGGAAATGGAAAGAAAGAAAGTCATGCACAAATCTAAGTGGGTCACTCACAATTTCATGGAATTGACGCGAGAAGCTGCAAAAGGGTATTCTGATCATAGCAGAGAAGAAGAATTACTAGAGGAGGAAGAGGAATTAGCAAAAACAAGTAATAAAGAAAGCAGTAAGCAATACTATCCCTTTTCTTCTTCATCACCCTCAAATCCATGGTTGGGGATGCTTCATCACCATGATCATCATCATCATCAACAATCCCCAGAGGCCACAACCCCTTGTGAATCTCACAATTCATCACCTGGGTTAGGGTTACACCACCAAGATGCACCTTCTAATTCCAATTCTGCCATTCTCAATCCCCGAAAGCTAGACTTCATGGACTTATCGCTCGGAAACAAGGAAGAAGATGAAGCCAACAATTCTATTGAGAAAGAGCATATGTTTGATAAAGTTGTGACTCCGAGTGATGTGGGCAAACTGAACCGCCTTGTGATACCCAAACAGCACGCCGAGCGGTACTTCCCGCTAGACTCCACCACCAACGAGAAAGGCCTGCTCTTGAATTTCGAGGACCGGAACGGCAAGCTATGGCGGTTCCGGTACTCCTATTGGAACAGCAGCCAGAGCTATGTCATGACCAAAGGGTGGAGCCGTTTTGTTAAAGAGAAGAAGCTTGACGCCGGCGACATTGTGTCGTTCCAGCGTGGTCTCGGCGAATTGCATAGACATAGATTGTACATAGATTGGAGGCGCCGGCCTGATTACAACGGTCTTGCCGGCGCCGATCATCATCGTCCTGGTGCTGGAAGCACCCTGATTACACCATTACTTCTTCCAAATCAATATTCCATGAGGTGGGATGGTAGATTATACTCGCTTCCGGCGGTGGTGCCTACGGCGCCGCCGCCACGACACCATGAACAGTTCCAGCAAGTGAATTACCCCTTTCAGCAACCGTCGCAACTGCTTCAGCACCAGCGACAACACCACCAGCTCTATAGTGGAATTCAAGGAAGCTATAATGAGCTGAATTTGAGATCTGGGTCGCATTACTATCTGAGGTCGTCGACACCGGGAGATCGAAACATGTTGGGGCAGCGAGAGGGAGGAGGTAATATAACTCCGATGATCATCGATTCCGTGCCGGTAGTCCACGGTAAGAGCAATCCTAGTACTAGTAAAATTACTGATACTTCAGGAAAAAGACTTAGGCTATTTGGGGTTAACATGGAATGTTCTTCGTCGTCAACTACGGGAGAACATATGCCAATGGCTAATTCATCACTTGCCTCACCAAATCTTCAATATCTGAGAGAACCCCGTGAAGAAGAAGACCCACTTTCTTCATCATCATCATCAGCAGTAGCAGCAACAAGGTTTGCAGATCAAAGGGGGAAAACTTCAGTGCTTTTTGATTTGAGCCCCTCCTTCCAATACCGGCAGTGA 1551 0.4694 MTLTSIGTLVEGEGMIFFQEDKLKKLAHEYPIQDRSREMERKKVMHKSKWVTHNFMELTREAAKGYSDHSREEELLEEEEELAKTSNKESSKQYYPFSSSSPSNPWLGMLHHHDHHHHQQSPEATTPCESHNSSPGLGLHHQDAPSNSNSAILNPRKLDFMDLSLGNKEEDEANNSIEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSTTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGELHRHRLYIDWRRRPDYNGLAGADHHRPGAGSTLITPLLLPNQYSMRWDGRLYSLPAVVPTAPPPRHHEQFQQVNYPFQQPSQLLQHQRQHHQLYSGIQGSYNELNLRSGSHYYLRSSTPGDRNMLGQREGGGNITPMIIDSVPVVHGKSNPSTSKITDTSGKRLRLFGVNMECSSSSTTGEHMPMANSSLASPNLQYLREPREEEDPLSSSSSSAVAATRFADQRGKTSVLFDLSPSFQYRQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1304 516 Coils Coil 69 89 - -
Dere11g1304 516 MobiDBLite consensus disorder prediction 88 106 - -
Dere11g1304 516 MobiDBLite consensus disorder prediction 123 152 - -
Dere11g1304 516 MobiDBLite consensus disorder prediction 63 152 - -
Dere11g1304 516 Pfam B3 DNA binding domain 183 287 IPR003340 GO:0003677
Dere11g1304 516 Gene3D - 176 299 IPR015300 -
Dere11g1304 516 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 61 460 IPR044800 GO:0003700
Dere11g1304 516 CDD B3_DNA 181 270 IPR003340 GO:0003677
Dere11g1304 516 SUPERFAMILY DNA-binding pseudobarrel domain 180 286 IPR015300 -
Dere11g1304 516 MobiDBLite consensus disorder prediction 473 494 - -
Dere11g1304 516 SMART B3_2 183 288 IPR003340 GO:0003677
Dere11g1304 516 ProSiteProfiles B3 DNA-binding domain profile. 183 288 IPR003340 GO:0003677
Dere11g1304 516 FunFam B3 domain-containing protein 176 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1304 Dere-ChrDere11 24785288 24789780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1304 169 453 RAV Transcription Factor Family AT2G46870 50.865 1.06e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere11g1304 B3 3.8e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1304 11 24785288 24789780 Dere11g1304 11 24785288 24789780 ECH