LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere11g1302	ATGGATTTCGGGGGACCCAGCCAGCCCCGTCTGATCGGAGATTACATACTGGGACCGCGAATCGGGTCGGGTTCTTTCGCGGTGGTGTGGCGCTCAAGGCATCGTCACTCTGGTTTGGAGGTTGCTGTTAAAGAGATTGACAAGAAATTGCTTAGCCCGAAAGTTAGTGAGAATCTGCTCAAAGAGATTTCTATTCTCAGCACCATCAATCACCCAAACATTATTCGATTATTCGAAGCAATCCAGACCAATGATAGGATTTACCTTATTTTGGAGTATTGCGATGGCGGTGACCTTGCTACTTACATTCATCGACGTGGAAAAGTTTCAGAATCCGTTGCTCGGCATTTTATGAGGCACTTAGCTGCGGGGCTGATGGTACTTCAAGAAAAGCATCTCATTCATAGAGATTTAAAACCACAGAACTTACTATTGTCTACTTCTGGAGGTACACCACTACTGAAAATAGGCGATTTTGGTTTTGCAAGGTCTCTCACACCCCAAGGGTTGGCAGACACACTATGCGGTTCACCATTGTACATGGCTCCAGAAATAATTCAAAATCAGAAGTATGATGCCAAGGCTGATTTATGGAGTGTAGGAGCAATATTGTTCCAGCTAGTGACTGGGAGGCCACCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAGAACATTTTAACATCCACTGAACTGCAGTTTCCACAAGAGGTTTTAAATGAGTTACATCCAGACTGCTTAGATCTTTGCAGATGCCTGTTACGTCAAAACCCAGTTGAGCGATTAACATTCAAAGAGTTCTTCAATCACAATTTCCTACGGGAGCCCAGGTCAATCGTAAATGTTGAGCAGTCTTCTTTACTCTCATCAGAAAGATTAATGGTTCAGCAATATAATAGTATCTCTACATCGGACAAGATGCCTCAGTTGCATTCTGGATATCATTTTGAGTCATCTGTAGATGACCCAGTGGTAATCAGTTCGGCTGTCAATGAGACCATACTGTTACAAAGAAATGATAGTGCGAATACTGCTGCAACTAAGAATGTTCAGGGTATGTTTTCAACTATTGAATTTGATAAGCAAGGGATGCCTGTTGGTACTGTTACTCATTTGTTAAACCAGCCTCAAGTTTCTCATTTAATGGAGTCCATTGAGAAAGATTATGTCCTAGTCAACAATTCTCATTTTTCATCATTGGAGGCTTTCTCGGATTTCTGTGAGGCATCTGTGCAAGATAATATCCCTAGCAGAGTTTCTATCTCTCCTTCAAAGAGGGTTGACCTTGAAGTTGGAGTTTCAAAGCAAACAAAGGATTCAGCCTCTTGCTATGTTGATGGAGAAGAAAAGTCAAATATTGATGAACTTGAGGCATCCTCTGTGTTTGCTAACCTGTGGAAAGAGCAAGGAGTATCCTCCCTTCAGCCTTCGAGTAGGTTAGATTTGTTGCATCAATATGTGCTGATTCTCACAGAACTCTCACAAGAAAAATACAATGCAGGACTGTATTTAGAGTCGTTTGCAGTTGAGCTGGTGGTTTTGGCTATATGGAAGAAAGCACTAGAAGTGTGTAACTCTTGGCTGGCCTCCATCACTGTGGGCAAATTGTCTGGAAGCCCTGCGGCGAAAGAATCCACATTCTCCTGCAGAGATGAAAGCACATCACAGACCATGGAACAGAAAATAGATTTTAGTGAGCCTTCATCTGTGTCCTTGTGGGCCAAGCAAGGGTTTATTTTTGCAGTTGATCATGCAGAGAAATTATCATGCCTTATTCAAAATATGGATGGTGCAGCCGAGATGCCAGATGCAATGGAGATCATATTTCAAAATGCACTATCAGTCGGCAGAAGTGGTGCTGTAGACGAGTTAATGGAAAACCGAGGTAAGGCAGCTGCATCTTATTCAAAAGCGATGCTTCTTCTTTCATTTATTGTGAGAGAAGCAGGGCATCTTCCATTGACCCCACCATTTTCACTAACTCTTGATAATAGGAAGAGAATTTTACAGTATATTCTCAACCTGCGGTCGCATCAACTTCAGTCCTCATCTACAGAGCCTTCTTCGAAGGCATCCCACATTCTTTTATAA	2091	0.4228	MDFGGPSQPRLIGDYILGPRIGSGSFAVVWRSRHRHSGLEVAVKEIDKKLLSPKVSENLLKEISILSTINHPNIIRLFEAIQTNDRIYLILEYCDGGDLATYIHRRGKVSESVARHFMRHLAAGLMVLQEKHLIHRDLKPQNLLLSTSGGTPLLKIGDFGFARSLTPQGLADTLCGSPLYMAPEIIQNQKYDAKADLWSVGAILFQLVTGRPPFDGNSQLQLFQNILTSTELQFPQEVLNELHPDCLDLCRCLLRQNPVERLTFKEFFNHNFLREPRSIVNVEQSSLLSSERLMVQQYNSISTSDKMPQLHSGYHFESSVDDPVVISSAVNETILLQRNDSANTAATKNVQGMFSTIEFDKQGMPVGTVTHLLNQPQVSHLMESIEKDYVLVNNSHFSSLEAFSDFCEASVQDNIPSRVSISPSKRVDLEVGVSKQTKDSASCYVDGEEKSNIDELEASSVFANLWKEQGVSSLQPSSRLDLLHQYVLILTELSQEKYNAGLYLESFAVELVVLAIWKKALEVCNSWLASITVGKLSGSPAAKESTFSCRDESTSQTMEQKIDFSEPSSVSLWAKQGFIFAVDHAEKLSCLIQNMDGAAEMPDAMEIIFQNALSVGRSGAVDELMENRGKAAASYSKAMLLLSFIVREAGHLPLTPPFSLTLDNRKRILQYILNLRSHQLQSSSTEPSSKASHILL	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere11g1302	696	CDD	STKc_ATG1_ULK_like	21	272	-	-
	Dere11g1302	696	FunFam	Non-specific serine/threonine protein kinase	5	95	-	-
	Dere11g1302	696	SUPERFAMILY	Protein kinase-like (PK-like)	11	307	IPR011009	-
	Dere11g1302	696	FunFam	Serine/threonine-protein kinase ATG1	7	316	-	-
	Dere11g1302	696	ProSitePatterns	Protein kinases ATP-binding region signature.	21	44	IPR017441	GO:0005524
	Dere11g1302	696	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	8	612	IPR045269	GO:0004674\|GO:0006914
	Dere11g1302	696	SMART	serkin_6	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1302	696	Pfam	Protein kinase domain	19	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1302	696	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	133	145	IPR008271	GO:0004672\|GO:0006468
	Dere11g1302	696	ProSiteProfiles	Protein kinase domain profile.	15	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere11g1302	696	Gene3D	Transferase(Phosphotransferase) domain 1	7	349	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere11g1302	Dere-ChrDere11	24726296	24731842	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere11g1302	5	266	CBL-interacting serine-threonine protein kinases	AT2G30360	37.313	4.58e-53	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Dere11g1302		Pkinase	2.8e-72	CL0016