Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1296 ATGGCTCATTCAGAGGAAGAGAATAATCACCTCCTGAAGCAACAACCACCAGAAATAGACGAAGAAGAGAGCTTCTCCTACGCAATGCAGCTGGCGACTTCTTCTGTGATTTCCATGGCCATGCAAACGGCCACGGAGCTCGGCGTCTTCGACGTCATCCACAGTGCCGGTCCTGGCGCGAAGCTCTCGACCATGGAGATCGCGTCGCGACTCTCTTGCAAGAATTCCGAAGCGCCCTCCGCTCTCGATCGTCTTCTCCGGCTTCTGGCGTCTCACTCTGTGCTTCACTGTTCCGTTGTTGCCGATGAAAATCGAAGGCTGGGATGTTTCCAGCGGCTGTACGGCCTCGCTCCGGTGGCCAAATTCTTTGTGCGAAATGCCGATGGTGTGTCGCTGGGCCCCATTCATGCGTTGGCACAAGATGGGGTCTTCCTCGATAGCTGGTCCAAACTAAAAGATGCAATTTTGGAAGGTGGCATTGCCTTCAATAGGGTCCATGGCTCACATGTTTTTGAGTATACAAGCTTAGACTCGAGGTTCAATGAAGTATTTAACAAGGCAATGGTGAATCAAACCACTTTAGTTGTGAAGAAGATTCTTGAATCCTACAAAGGTTTTGATGGCATCAATAGACTTGTGGATGTTGGTGGTGGTCTTGGGATCACTCTGAACTTGATCACTTCGAAATATCCTCATGTTCAAGGAATCAATTTCGACTTGCCCCATGTCGTACAACATGCTCTACCTTTCCCTGGAGTGGAACATGTGGGAGGAGATATGTTTGAAAGTGTGCCTGAAGGAGATGCCATCCTTATGAAGTGGATACTTCATGATTGGAGCGATGAACATTGCTTGAAGTTGTTGAAGAACTGCTATAAGGCCATTCCTAATGATGGAAAGGTGATAGTGGTGGAAGCAGTTTTTCCCATAGTACCAGAAACTTGTGCAGCAGCTAAGAGCACCTCCCAACTTGATGTGCTGATGATGACACAGTACCAAGGAGGCAAAGAGCGAAGTGAACAAGAGTTCATGGATTTAGCCACGTCAGCTGGGTTTAGTGGCATCAGATATGAATGCTTTGTTCGCAACTTTTGGGTTATGGAGTTCTTCAAGTAG 1116 0.4785 MAHSEEENNHLLKQQPPEIDEEESFSYAMQLATSSVISMAMQTATELGVFDVIHSAGPGAKLSTMEIASRLSCKNSEAPSALDRLLRLLASHSVLHCSVVADENRRLGCFQRLYGLAPVAKFFVRNADGVSLGPIHALAQDGVFLDSWSKLKDAILEGGIAFNRVHGSHVFEYTSLDSRFNEVFNKAMVNQTTLVVKKILESYKGFDGINRLVDVGGGLGITLNLITSKYPHVQGINFDLPHVVQHALPFPGVEHVGGDMFESVPEGDAILMKWILHDWSDEHCLKLLKNCYKAIPNDGKVIVVEAVFPIVPETCAAAKSTSQLDVLMMTQYQGGKERSEQEFMDLATSAGFSGIRYECFVRNFWVMEFFK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1296 371 FunFam Caffeic acid 3-O-methyltransferase 5 123 - -
Dere11g1296 371 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Dere11g1296 371 CDD AdoMet_MTases 211 304 - -
Dere11g1296 371 FunFam Caffeic acid O-methyltransferase 124 371 - -
Dere11g1296 371 PIRSF O-mtase 5 371 IPR016461 GO:0008168
Dere11g1296 371 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Dere11g1296 371 Gene3D Vaccinia Virus protein VP39 124 371 IPR029063 -
Dere11g1296 371 Gene3D - 4 123 IPR036388 -
Dere11g1296 371 PANTHER O-METHYLTRANSFERASE 28 356 IPR016461 GO:0008168
Dere11g1296 371 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 371 IPR016461 GO:0008168
Dere11g1296 371 SUPERFAMILY "Winged helix" DNA-binding domain 20 126 IPR036390 -
Dere11g1296 371 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1296 Dere-ChrDere11 24596289 24599007 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1296 16 371 Monolignol Biosynthesis Gene Families AT5G54160 51.397 8.89e-137 392