Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere11g1294 | ATGGCGAATTCAGAGGCAGAGAATAATCAACTCCTGAAGCAACAACCACCAGAAACAGACGAAGAAGAAGAGAGCTTCTCCTACGCCATGCAGCTGGCGACTTCTTCTGTGATTTCCGTGGCCATGCAAACGGCCACGGAGCTCGGCGTCTTTGACGTCATCCACAGAGCCGGTCCTGGCGCGAAGCTCTCGGCCGTGGAGATCGCGTCGCAACTCTCTTGCAAAAGCTCCGAAGCGCCCTCCACTCTCGATCGTCTTCTCCGGCTTCTGGCGTCTCACTCTGTGCTTCACTGTTCCGTCGTCGCCGATGAAAATCGAGGGCTGGGATGTTTCCGGTGGCTGTACGGCATTCTTTGTGCGAAATGCCGACGGTCCAAACTGAAAGATGCAATTTTGGAGGGTGGCATTGCCTTCAATAGGGTCCATGGCTCAAATGCTTTTGAGTATCCAAGCCTAGACTCGAGGTTCAATGAAGTATTTAACAAGGCAATGGTGAATCAAACCACTTTAGTTGTGAAGAAGATTCTTGAATCCTACAAAGGTTTTGATGGCATCAATAGACTTGTGGATGTTGGTGGTGGTCTTGGGATCACTCTGAACTTGATCACTTCGAAATATCCTCATGTTCAAGGAATCAATTTCGACTTGCCCCATGTCGTACAACATGCTCTTCCTTTTCCGGGAGTGGAACATGTGGGAGGAGATATGTTTGAAAGTGTGCCTGAAGGAGATGCCATCCTTATGAAGTGGATACTTCATGATTGGAGCGATGAACATTGCTTGAAGCTGTTGAAGAACTGCTATAAGGCCATTCCTAATGATGGAAAGGTGATAGTGGTGGAAGCAGTTTTTCTCATAGTACCAGAAACTTGTGCAGCAGCTAAGAGCACCTCCCATCTTGATGTGCTGATGATGACACAGAACCCAGGAGGCAAAGAGCGAAGTGAACAGGAGTTCATGGATTTGGCCACGTCAGCTGGGTTTACTGGCATTAGATATGAATGCTTTGTTCGTAACTTCTGGGTTATGGAGTTCTTCAAGTAG | 1044 | 0.4808 | MANSEAENNQLLKQQPPETDEEEESFSYAMQLATSSVISVAMQTATELGVFDVIHRAGPGAKLSAVEIASQLSCKSSEAPSTLDRLLRLLASHSVLHCSVVADENRGLGCFRWLYGILCAKCRRSKLKDAILEGGIAFNRVHGSNAFEYPSLDSRFNEVFNKAMVNQTTLVVKKILESYKGFDGINRLVDVGGGLGITLNLITSKYPHVQGINFDLPHVVQHALPFPGVEHVGGDMFESVPEGDAILMKWILHDWSDEHCLKLLKNCYKAIPNDGKVIVVEAVFLIVPETCAAAKSTSHLDVLMMTQNPGGKERSEQEFMDLATSAGFTGIRYECFVRNFWVMEFFK | 347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere11g1294 | 347 | Pfam | O-methyltransferase domain | 126 | 328 | IPR001077 | GO:0008171 | |
| Dere11g1294 | 347 | CDD | AdoMet_MTases | 187 | 280 | - | - | |
| Dere11g1294 | 347 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Dere11g1294 | 347 | FunFam | Caffeic acid 3-O-methyltransferase | 6 | 118 | - | - | |
| Dere11g1294 | 347 | Gene3D | - | 37 | 175 | IPR036388 | - | |
| Dere11g1294 | 347 | SUPERFAMILY | "Winged helix" DNA-binding domain | 20 | 106 | IPR036390 | - | |
| Dere11g1294 | 347 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Dere11g1294 | 347 | PIRSF | O-mtase | 119 | 347 | IPR016461 | GO:0008168 | |
| Dere11g1294 | 347 | PIRSF | O-mtase | 6 | 120 | IPR016461 | GO:0008168 | |
| Dere11g1294 | 347 | Gene3D | Vaccinia Virus protein VP39 | 157 | 336 | IPR029063 | - | |
| Dere11g1294 | 347 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 30 | 347 | IPR016461 | GO:0008168 | |
| Dere11g1294 | 347 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 125 | 345 | IPR029063 | - | |
| Dere11g1294 | 347 | Pfam | Dimerisation domain | 42 | 91 | IPR012967 | GO:0046983 | |
| Dere11g1294 | 347 | FunFam | Caffeic acid O-methyltransferase | 108 | 347 | - | - | |
| Dere11g1294 | 347 | PANTHER | O-METHYLTRANSFERASE | 29 | 332 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere11g1294 | Dere-ChrDere11 | 24538766 | 24552412 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere11g1294 | 14 | 347 | Monolignol Biosynthesis Gene Families | AT5G54160 | 48.343 | 2.88e-117 | 342 |