Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1279 ATGGCCCAGAAGTTGAAATCTAATGGCGCAAAATTAAATGACCTCGATCAAGAAGAAGAAAGCTTATGCTACGCCAAGCAACTGGTGATGTCCAGTGTGCTGCCAATGACGTTGCAAACGACATTTGAGCTTGGCGTTTTCGACATTATAGCCAAAGCCGGAGAAGGCGCCAAGCTGTCTGCCAACGACATAGCGCATCAGCTTCCAACGAAGAACCCAGACGCACCCAGAATGCTAGATCGCATTCTTGGCCTCCTCGCTACTTTCTCTTTGCTCCATTGCTCTTCTGCTGCTGATGCGGACAAAGAAGGAAGTGGGTCCACTAAGTACCACAGGCTCTATAGCCTCGCTCCTGCCTCCAAGTTCTTCGCTCGCGATGCTGATGGTATGTCTTTGGGGCCCCTCATGACCTTGATTCAACACAAGGCCTTCTTGGAAACCTGGTTCCATCTGAAAGACGCAATTCTGGAAGGAGGAATAGCTTTTGAAAGGGCTCATCAAGGCATGCATCAGTTTGAGTACCTTGGCGTTGACTCTGAGTTCAATCAACTTTTCAACACAGCATTGATCGATCACACCTCAATTGTTATGAAGAAGGTTCTTGAATCCTACAAAGGTTTTGAGCACCTCAACTCCATTGTGGATGTCGGGGGTGGCCTTGGGCATTGCCTCAGCTTGATCACTTCCAAGTACCCTCATCTTAAGGCTACCAATTTTGACTTGCCTCATGTCATCCAACACGCCTCTCCCTATCCTGGTGTAGAACACGTTGCAGGAGATATGTTCGAGAGTGTACCCAAGGCTGATGCCATTTTTATGAAGTGGATTCTTCATGACTGGTGCGACGAAAAGTGCTTAAAGCTATTGAAAAACTGCTTCGAGGCCACTCCCGAGGATGGGAAGGTGATTGTAGTGGAAACAGGCATATCGGCTATGCCTGAGACCACTGCTTCTGTAAAGTGCAACTTCGAAATTGATGTATTCATGATGGCTCAAGATCCAGGAGGCAAAGAACGAACCGAGCAAGAATTCATTGAACTCGCAAAAGCTGCTGGATTTAGGGGCGTTCGATACGAATGTCATGTCCGTAATTTCTGGGTTATTGAGTTCTTCAAGTAG 1119 0.4736 MAQKLKSNGAKLNDLDQEEESLCYAKQLVMSSVLPMTLQTTFELGVFDIIAKAGEGAKLSANDIAHQLPTKNPDAPRMLDRILGLLATFSLLHCSSAADADKEGSGSTKYHRLYSLAPASKFFARDADGMSLGPLMTLIQHKAFLETWFHLKDAILEGGIAFERAHQGMHQFEYLGVDSEFNQLFNTALIDHTSIVMKKVLESYKGFEHLNSIVDVGGGLGHCLSLITSKYPHLKATNFDLPHVIQHASPYPGVEHVAGDMFESVPKADAIFMKWILHDWCDEKCLKLLKNCFEATPEDGKVIVVETGISAMPETTASVKCNFEIDVFMMAQDPGGKERTEQEFIELAKAAGFRGVRYECHVRNFWVIEFFK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1279 372 FunFam Caffeic acid 3-O-methyltransferase 5 123 - -
Dere11g1279 372 PANTHER O-METHYLTRANSFERASE 28 357 IPR016461 GO:0008168
Dere11g1279 372 Pfam O-methyltransferase domain 148 354 IPR001077 GO:0008171
Dere11g1279 372 FunFam Caffeic acid O-methyltransferase 124 372 - -
Dere11g1279 372 SUPERFAMILY "Winged helix" DNA-binding domain 17 126 IPR036390 -
Dere11g1279 372 Pfam Dimerisation domain 36 87 IPR012967 GO:0046983
Dere11g1279 372 Gene3D - 6 123 IPR036388 -
Dere11g1279 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 372 IPR016461 GO:0008168
Dere11g1279 372 PIRSF O-mtase 2 372 IPR016461 GO:0008168
Dere11g1279 372 Gene3D Vaccinia Virus protein VP39 124 372 IPR029063 -
Dere11g1279 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 128 370 IPR029063 -
Dere11g1279 372 CDD AdoMet_MTases 213 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1279 Dere-ChrDere11 24278203 24279647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1279 18 372 Monolignol Biosynthesis Gene Families AT5G54160 51.549 1.10e-133 385