Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1273 ATGGAGAGGCTTCAAGGACCCATCAATTCCTGTTTCTTTGATGAGCATTTGGAAGTAAATTGTTTAGAGCAAGGCTTCATCAATACAGAGGAAGAGGAACAATTTTATATATCAAGCTTGGAGGATGAAAAGATGCCATTTCTACAGATGTTGCAGAGTGTGGAATCCCCACAACAGTTTTTTCCCTTCTCAGAGGCAAATTTTCAAACACTTCTAAGGCTAGAACACCTGAAGAGACAACCATGGGAAGAAAAACCTTACATACCCAGATTGGACACCCAAATCCAAGCAAAAGAACTTGAAAGCTGCGTCACACTCGACGTTGTAGACAGCCATTCACCTGTGAAATCCGAAACCAACGAAGACTTTCATCTTCTTCCTCATTCAACTATAATGGTTCAGAAAGAACGACCCATTTTAGCCGAAAATTCTTGCAGAGACCCCAAAAGGAGAAAGCGAAAGAGAACGAGACCAATCAAGAACAAGGAAGAAGTGGAAAACCAGAGAATGACCCACATTGCCGTGGAACGGAACCGTCGACGCCAGATGAACGACCATCTCAGTGTTCTAAGGACGCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCGTCTATTATCGGAGGTGCAATAGATTTCGTGAAGGAATTAGAGCAGCTGCTTCAAACCCTCGAGGAACAAAAGAAGATTAGAAAGAACGAAGAGATTGGCTCTTCTTATGGGGAGATTCTGAAACCACCATCGCCTGGTTACGAAGAAGGAGAAGCGGCGTGTGTTGGGGAAGAAGAGGTGAAGGAGGCAGAGATAGAGGCGACGGTGATTCAGACGCATGTGAACTTGAAGATTCGATGCAGAAGGAGGCATGGGCAATTGGTGAAAGCCATTGTTTGTTTGGAGGATCTTAGGCTTAGCATTCTGCACCTCAACATCACCTCCTCGCAGGGTTCGGTACTATACTGTTTCAATCTCAAGATTGAAGAAGAGTGTAAGCTGGGGTCAGCAAGTGAAATAGCAGAAGCAGTGCGTCATATATTCAGATTCATTGATGGATAG 1056 0.446 MERLQGPINSCFFDEHLEVNCLEQGFINTEEEEQFYISSLEDEKMPFLQMLQSVESPQQFFPFSEANFQTLLRLEHLKRQPWEEKPYIPRLDTQIQAKELESCVTLDVVDSHSPVKSETNEDFHLLPHSTIMVQKERPILAENSCRDPKRRKRKRTRPIKNKEEVENQRMTHIAVERNRRRQMNDHLSVLRTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQTLEEQKKIRKNEEIGSSYGEILKPPSPGYEEGEAACVGEEEVKEAEIEATVIQTHVNLKIRCRRRHGQLVKAIVCLEDLRLSILHLNITSSQGSVLYCFNLKIEEECKLGSASEIAEAVRHIFRFIDG 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1273 351 Gene3D - 158 242 IPR036638 GO:0046983
Dere11g1273 351 CDD bHLH_AtFAMA_like 170 241 - -
Dere11g1273 351 SMART finulus 173 224 IPR011598 GO:0046983
Dere11g1273 351 Pfam Helix-loop-helix DNA-binding domain 168 219 IPR011598 GO:0046983
Dere11g1273 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 167 218 IPR011598 GO:0046983
Dere11g1273 351 PANTHER MAX DIMERIZATION, MAD 118 349 - -
Dere11g1273 351 Coils Coil 215 235 - -
Dere11g1273 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 233 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1273 Dere-ChrDere11 24208047 24210055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1273 30 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 45.697 2.91e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere11g1273 HLH 3.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1273 11 24208047 24210055 Dere11g1273 11 24208047 24210055 ECH