Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere11g1266 ATGGGTGAAGTGTTGGTGGCGATGAATGAAGAGGAAATGGAGGTGGGTTTGGAAACAGAGGAGGAACAGACCAAGAAGATGGTTCGGTGGGAGAAGTTTTTACCCCGGGTGGTGCTCAGAGTGTTGCTTGTGGAAGCGGATGATTCTACTCGTCATATAATCGCTGCCCTCCTTCGTAAATGCAGTTACAGGGTTGCTGCAGTTCCTGATGGACTAAAGGCATGGGAGACATTGAAGAGGAAAGCTTCTGACATAGATCTCATATTAACAGAAGTGGAGTTGCCAACTATATCTGGATTTGGACTTCTTACTTCAATCATGGAGCATAATATATGCAAGAACATTCCTGTCATAATGATGTCTTCTCATGATTCGGTTAGCACAGCATTGAAATGCATTTTGAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGGAGGAATGAGTTAAGGAACCTCTGGCAGCATGTATGGAGAAGACATGAGATTACCAGGCAACCTCAAAAGTTGACATTTCCACAGATAAACCTCAAGACTACTTCTGAAAACAATGCTGCAAGCAATCATTGTGATGGTTCTGTGGCTTCCACACAGAAAAACAATGGATGCAGTGGGAAAGGGAGTGAGGCCCAAAGCACTTGTACATCACCATTTTTGGAAGCTGAGAGTGCATACATGCAAAATATGCAGGCATCCCATCTGAAGAGTTCTTCAAATTTGAGCAACAATGAAACAGTGCAGTATGAAGACTCAACCAAATTGGAAAATGAATCAGTTAAACATAACAATGAGACTGGAGAGAAGTCAATGGCATTGTTATCACCGGCTGCTAGGTGTGACAAGAGTTTTAAGTTGACAGATCTAGGGCAGGAGCAACGAAATGATTGTGCTGAAAAAAAGAATCAAGTTGAAGTTCTACGAGCAGAGCTAAGCAAAGGTAATCCTGATATGAATACAGAGATTCATGAATGCAAAAATAAGCTGGTAGAAACTTCTAGAGGAGCTATTGACTTGATTGCCGCTTTCAAGAATTTACCGGAGAAGTATGATGAAAGCTGTAGTCTGAGTGGTGGTGGTACAAAGAAGGTTGATTTTGATCCACAATTGGAACTTTCTTTACGAAGAGATTTTCCTGGCAGCTCATGTAAACAAGTTACTGATGAAAAGCCAGCATTGAACCATTCAAAAGCTTCTGCGTTTTCTTGGTATAGTGGATATAAGTTTCCATCACCATCAATCACTTCTGCTAAAGTAAGTAACACCGATTGGAATGCTCATGAATCCAGTAAATTATCTGGAAATACTGTTGATGGCACAAATCATAGACCGGAGAACATTAAAACTCTGGCAATTAGTCAGCATGGACAAGTTGAACTACAGTCTCTAAAGGGTCAACAAGGACAGTTTCCTGCTACTGGGGTTACTTCTGGTAATAAGTCTACTGGATATGGAAATGTTTTGCAATCTATGTTCTATACACAGTCTGGTGTTCAATCCCCTTGGAGTCCAAAACCTATCTGCCCGAATGAGAGTTCTCCATTTCTCACAAGTAATTCTTTCCAGTCCAATCCTGAAAGTCGCAAGTCAGAGGGACGTTATCACCGTTCTGATGATGCCACCTATACTTCTGATGAACAAACTGTATATGAAAAAGGCAATTTGGACCCTGCAAGGCAAGACTCTTCTGCTGTTGATCAGAGCAGTACTAGTTTATGTAATGACACTGCAAATCATAATAATAATAGTAATAATACTAGTGCATACAAAAACACAGGCAAATTTGATGGAAATGCTACTTCCGCTGTGGTAGTTGAGAGCAACCCTGGAAATTATGGCGACAGTGCTTGTCATAATTATGATGGGTTTAGAGGGACAGATTCTCACTGTCCCAGCCTAAGAGAAGCTGCTCTAACAAAGTACCGAATGAAGCGGAAAGAGAGGTGCTATGAGAAAAAGGTCCGATATCAAAGCCGGAAAAGATTAGCAGAGCAGCGTCCCCGAGTTAAAGGGCAGTTTGTACGGCAAGTACATTATAGTGATCATCCAGTTGCAGATGCTGATGGTGGTTCCTGA 2073 0.4153 MGEVLVAMNEEEMEVGLETEEEQTKKMVRWEKFLPRVVLRVLLVEADDSTRHIIAALLRKCSYRVAAVPDGLKAWETLKRKASDIDLILTEVELPTISGFGLLTSIMEHNICKNIPVIMMSSHDSVSTALKCILKGAADFLIKPVRRNELRNLWQHVWRRHEITRQPQKLTFPQINLKTTSENNAASNHCDGSVASTQKNNGCSGKGSEAQSTCTSPFLEAESAYMQNMQASHLKSSSNLSNNETVQYEDSTKLENESVKHNNETGEKSMALLSPAARCDKSFKLTDLGQEQRNDCAEKKNQVEVLRAELSKGNPDMNTEIHECKNKLVETSRGAIDLIAAFKNLPEKYDESCSLSGGGTKKVDFDPQLELSLRRDFPGSSCKQVTDEKPALNHSKASAFSWYSGYKFPSPSITSAKVSNTDWNAHESSKLSGNTVDGTNHRPENIKTLAISQHGQVELQSLKGQQGQFPATGVTSGNKSTGYGNVLQSMFYTQSGVQSPWSPKPICPNESSPFLTSNSFQSNPESRKSEGRYHRSDDATYTSDEQTVYEKGNLDPARQDSSAVDQSSTSLCNDTANHNNNSNNTSAYKNTGKFDGNATSAVVVESNPGNYGDSACHNYDGFRGTDSHCPSLREAALTKYRMKRKERCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHYSDHPVADADGGS 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere11g1266 690 CDD psREC_PRR 41 144 - -
Dere11g1266 690 Gene3D - 39 312 - -
Dere11g1266 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 345 IPR045279 GO:0009736
Dere11g1266 690 SMART REC_2 39 154 IPR001789 GO:0000160
Dere11g1266 690 ProSiteProfiles CCT domain profile. 633 675 IPR010402 GO:0005515
Dere11g1266 690 SUPERFAMILY CheY-like 39 170 IPR011006 -
Dere11g1266 690 MobiDBLite consensus disorder prediction 498 526 - -
Dere11g1266 690 MobiDBLite consensus disorder prediction 498 590 - -
Dere11g1266 690 MobiDBLite consensus disorder prediction 527 541 - -
Dere11g1266 690 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Dere11g1266 690 MobiDBLite consensus disorder prediction 559 590 - -
Dere11g1266 690 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
Dere11g1266 690 Coils Coil 289 309 - -
Dere11g1266 690 Pfam CCT motif 633 675 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere11g1266 Dere-ChrDere11 24030071 24036103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere11g1266 633 682 Response Regulator Gene Family AT5G24470 80.000 1.54e-19 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Dere11g1266 Response_reg 1.5e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1266 11 24030071 24036103 Dere11g1266 11 24030071 24036103 ECH